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Pcnp Gene Detail
Summary
  • Symbol
    Pcnp
  • Name
    PEST proteolytic signal containing nuclear protein
  • Synonyms
    1110018D06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923552
    NCBI Gene: 76302
Location & Maps
more
  • Sequence Map
    Chr16:56007245-56029739 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      22495 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 33.77 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    PCNP, PEST proteolytic signal containing nuclear protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PCNP, PEST proteolytic signal containing nuclear protein
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 57092
    neXtProt AC: NX_Q8WW12

  • Chr Location
    3q12.3; chr3:101573534-101594437 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 10676
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: PCNP
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    26
  • Gene trapped
    25
  • Targeted
    1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000025837 VEGA Gene Model | MGI Sequence Detail 22495 C57BL/6J ±  kb
transcript OTTMUST00000063651 VEGA | MGI Sequence Detail 608 Not Applicable  
polypeptide OTTMUSP00000031501 VEGA | MGI Sequence Detail 189 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    267 from dbSNP Build 142
Protein
Information
less
  • UniProt
    8 Sequences
  • Protein Ontology
    PR:000012422 PEST proteolytic signal-containing nuclear protein
  • InterPro Domains
    IPR029169 PEST proteolytic signal-containing nuclear protein
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 6
Other
Accession IDs
less
MGI:2146471
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/23/2016
MGI 6.05
The Jackson Laboratory