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Slc38a3
Gene Detail
Symbol

Name
ID
Slc38a3
solute carrier family 38, member 3
MGI:1923507
Synonyms
0610012J02Rik, D9Ucla2, Snat3
Feature Type
protein coding gene
Genetic Map
Chromosome 9
58.69 cM, cytoband F1
Detailed Genetic Map ± 1 cM


Mapping data(7)
Sequence Map
Chr9:107650634-107669530 bp, - strand
From VEGA annotation of GRCm38

  18897 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4983  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC38A3
Gene Tree: Slc38a3

Human
homologs
SLC38A3, solute carrier family 38, member 3
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 10991
neXtProt AC: NX_Q99624

Human Synonyms: G17, NAT1, SN1, SNAT3

Human Chr (Location): 3p21.3; chr3:50205246-50220979 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(1) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc38a3 interacts with 185 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (103)    Tissues (34)    Images (48)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 103
cDNA source data(145)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc38a3    NEW 
Molecular
reagents
All nucleic(149) cDNA(147) Primer pair(1) Other(1)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000050784 (Evidence)
Ensembl Gene Model ENSMUSG00000010064 (Evidence)
Entrez Gene 76257 (Evidence)
UniGene 296560
DFCI TC1590962, TC1575967
DoTS DT.101158056, DT.491840, DT.91346114, DT.94148570
NIA Mouse Gene Index U031320
Consensus CDS Project CCDS23503.1
International Mouse Phenotyping Consortium Status Slc38a3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050784 VEGA Gene Model | MGI Sequence Detail 18897 C57BL/6J ±  kb
transcript OTTMUST00000128710 VEGA | MGI Sequence Detail 3151 Not Applicable 
polypeptide OTTMUSP00000069220 VEGA | MGI Sequence Detail 505 Not Applicable 

For the selected sequences
All sequences(81) RefSeq(7) UniProt(6)
Polymorphisms
RFLP(1) : SNPs within 2kb(161 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013057 Amino acid transporter, transmembrane
Protein Ontology PR:000015120 sodium-coupled neutral amino acid transporter 3
References
(Earliest) J:15567 Warden CH, et al., Linkage mapping of 40 randomly isolated liver cDNA clones in the mouse. Genomics. 1993 Nov;18(2):295-307
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(39)
Other
accession IDs
MGD-MRK-8787, MGI:94853

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory