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6530409C15Rik Gene Detail
Summary
  • Symbol
    6530409C15Rik
  • Name
    RIKEN cDNA 6530409C15 gene
  • Feature Type
    antisense lncRNA gene
  • IDs
    MGI:1923474
    NCBI Gene: 76224
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr6:28215555-28260862 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 11.99 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    110 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923474
antisense lncRNA gene Chr6:28215555-28260862 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004239
antisense lncRNA gene Chr6:25921220-25973635 (+)
A/J MGP_AJ_G0004217
antisense lncRNA gene Chr6:24833306-24878611 (+)
AKR/J MGP_AKRJ_G0004198
antisense lncRNA gene Chr6:25652285-25697584 (+)
BALB/cJ MGP_BALBcJ_G0004204
antisense lncRNA gene Chr6:24994361-25039602 (+)
C3H/HeJ MGP_C3HHeJ_G0004152
antisense lncRNA gene Chr6:25638516-25683574 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004353
antisense lncRNA gene Chr6:26728276-26775135 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003826
antisense lncRNA gene Chr6:23051756-23099888 (+)
CAST/EiJ MGP_CASTEiJ_G0004114
antisense lncRNA gene Chr6:25444816-25493100 (+)
CBA/J MGP_CBAJ_G0004146
antisense lncRNA gene Chr6:27689443-27737792 (+)
DBA/2J MGP_DBA2J_G0004162
antisense lncRNA gene Chr6:24787844-24837543 (+)
FVB/NJ MGP_FVBNJ_G0004178
antisense lncRNA gene Chr6:24544874-24590353 (+)
LP/J MGP_LPJ_G0004240
antisense lncRNA gene Chr6:26068272-26117760 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004168
antisense lncRNA gene Chr6:30232055-30295687 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004350
antisense lncRNA gene Chr6:25536301-25581538 (+)
PWK/PhJ MGP_PWKPhJ_G0004067
antisense lncRNA gene Chr6:24313946-24360099 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004011
antisense lncRNA gene Chr6:25238503-25286401 (+)
WSB/EiJ MGP_WSBEiJ_G0004150
antisense lncRNA gene Chr6:25496213-25545991 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000043340 Ensembl Gene Model | MGI Sequence Detail 45308 C57BL/6J ±  kb
transcript ENSMUST00000143551 Ensembl | MGI Sequence Detail 1573 Not Applicable  
polypeptide Q9D357 UniProt | EBI | MGI Sequence Detail 130 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 14
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/18/2019
MGI 6.14
The Jackson Laboratory