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6530402F18Rik Gene Detail
Summary
  • Symbol
    6530402F18Rik
  • Name
    RIKEN cDNA 6530402F18 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923470
    NCBI Gene: 76220
  • Alliance
    genome feature page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:29135128-29143005 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 19.66 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    173 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923470
 lncRNA gene Chr2:29135119-29143018 (-)
129S1/SvImJ ENSMUSG00200053651
 lncRNA gene Chr2:26104911-26112805 (-)
A/J ENSMUSG00195050276
 lncRNA gene Chr2:26199109-26207008 (-)
AKR/J ENSMUSG00220053667
 lncRNA gene Chr2:26316823-26324724 (-)
BALB/cJ ENSMUSG00180054426
 lncRNA gene Chr2:26218029-26225928 (-)
C3H/HeJ ENSMUSG00175053723
 lncRNA gene Chr2:26187224-26195123 (-)
C57BL/6NJ ENSMUSG00215049524
 lncRNA gene Chr2:26246028-26253929 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013541
 unclassified non-coding RNA gene Chr2:25120767-25128673 (-)
CAST/EiJ ENSTCUG00005053470
 lncRNA gene Chr2:25933212-25941100 (-)
CBA/J ENSMUSG00210017808
 lncRNA gene Chr2:26220519-26228418 (-)
DBA/2J ENSMUSG00185053699
 lncRNA gene Chr2:26112897-26120796 (-)
FVB/NJ ENSMUSG00205050767
 lncRNA gene Chr2:25964761-25972660 (-)
JF1/MsJ ENSUMUG00000056654
 lncRNA gene Chr2:26017084-26024975 (-)
LP/J ENSMUSG00230045410
 lncRNA gene Chr2:28040748-28048642 (-)
NOD/ShiLtJ ENSMUSG00190053027
 lncRNA gene Chr2:26219714-26227613 (-)
NZO/HlLtJ ENSMUSG00225010976
 lncRNA gene Chr2:35789800-35797699 (-)
PWK/PhJ ENSLUMG00010053037
 lncRNA gene Chr2:26092775-26100661 (-)
SPRET/EiJ ENSMSPG00010046470
 lncRNA gene Chr2:26823291-26831198 (-)
WSB/EiJ ENSIUOG00005053019
 lncRNA gene Chr2:26071395-26079291 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    34
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 76220 NCBI Gene Model | MGI Sequence Detail 7878 C57BL/6J ±  kb
transcript NR_029460 RefSeq | MGI Sequence Detail 4308 C57BL/6  
polypeptide Q9D362 UniProt | EBI | MGI Sequence Detail 153 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 4
References
more
  • Summaries
    All 15
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory