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Snrnp35 Gene Detail
Summary
  • Symbol
    Snrnp35
  • Name
    small nuclear ribonucleoprotein 35 (U11/U12)
  • Synonyms
    6330548G22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923417
    NCBI Gene: 76167
  • Alliance
    gene page
Location & Maps
more
  • Sequence Map
    Chr5:124483134-124491124 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      7991 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 63.61 cM, cytoband F
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SNRNP35, small nuclear ribonucleoprotein U11/U12 subunit 35
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNRNP35, small nuclear ribonucleoprotein U11/U12 subunit 35
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HM-1, U1SNRNPBP
  • Links
    NCBI Gene ID: 11066
    neXtProt AC: NX_Q16560
    UniProt: Q16560

  • Chr Location
    12q24.31; chr12:123457644-123472362 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    26
  • Tissues
    24
  • cDNA Data
    11
  • Literature Summary
    2
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024446 VEGA Gene Model | MGI Sequence Detail 7991 C57BL/6J ±  kb
transcript OTTMUST00000059936 VEGA | MGI Sequence Detail 1181 Not Applicable  
polypeptide OTTMUSP00000029201 VEGA | MGI Sequence Detail 244 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    55 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000015335 U11/U12 small nuclear ribonucleoprotein 35 kDa protein
    (term hierarchy)
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
    IPR034146 snRNP35, RNA recognition motif
Molecular
Reagents
less
  • All nucleic 14
    cDNA 11
    Primer pair 2
    Other 1

    Microarray probesets 2
References
more
  • Summaries
    All 35
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 11
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:246582 Doktor TK, et al., RNA-sequencing of a mouse-model of spinal muscular atrophy reveals tissue-wide changes in splicing of U12-dependent introns. Nucleic Acids Res. 2017 Jan 09;45(1):395-416
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
06/05/2018
MGI 6.12 		The Jackson Laboratory