Stx16
Gene Detail

Symbol Name ID

Stx16 syntaxin 16 MGI:1923396

Synonyms

5430410K23Rik, 6330500A18Rik, SYN16

Feature Type

protein coding gene

Genetic Map

Chromosome 2

97.85 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr2:174076308-174099771 bp, + strand From VEGA annotation of GRCm38   23464 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:2791  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Stx16

Human homologs

Human Homolog		STX16, syntaxin 16
NCBI Gene ID		8675
neXtProt AC		NX_O14662
Human Synonyms		SYN16
Human Chr (Location)		20q13.32; chr20:57226309-57254582 (+)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human STX16

Alleles and phenotypes

All alleles(6) : Targeted(3) Gene trapped(3)
 

Mice homozygous for a knock-out allele are viable and fertile and do not exhibit methylation abnormalities or develop a pseudohypoparathyroidism resistance phenotype.

 

Gene Ontology (GO) classifications

All GO classifications: (13 annotations)

Process	intracellular protein transport, protein transport, ...
Component	Golgi apparatus, integral to membrane, ...
Function	SNAP receptor activity

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (28)    Tissues (6)    Images (14)
Theiler Stages: 23

Assay Type	Results
RNA in situ	28

cDNA source data(12)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(12) cDNA(12)
Microarray probesets(4)

Other database links

VEGA Gene Model	OTTMUSG00000016368 (Evidence)
Ensembl Gene Model	ENSMUSG00000027522 (Evidence)
Entrez Gene	228960 (Evidence)
DFCI	TC1583171, TC1598658, TC1698695
DoTS	DT.101299437, DT.110694950, DT.55145076, DT.87025307, DT.94260305
NIA Mouse Gene Index	U002921
Consensus CDS Project	CCDS17147.2
International Mouse Knockout Project Status	Stx16

Sequences

Length	Strain/Species
genomic	OTTMUSG00000016368	VEGA Gene Model | MGI Sequence Detail	23464	C57BL/6J
transcript	OTTMUST00000039395	VEGA | MGI Sequence Detail	3865	Not Applicable
polypeptide	OTTMUSP00000017603	VEGA | MGI Sequence Detail	326	Not Applicable

All sequences(70) RefSeq(8) UniProt(8)

Polymorphisms

SNPs(78 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR006012	Syntaxin/epimorphin, conserved site
InterPro	IPR006011	Syntaxin, N-terminal
InterPro	IPR000727	Target SNARE coiled-coil domain
InterPro	IPR010989	t-SNARE
Protein Ontology	PR:000015788	syntaxin-16

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:185743 Cotney J, et al., Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb. Genome Res. 2012 Jun;22(6):1069-80
All references(36)

Other accession IDs

MGI:1914046, MGI:2139029, MGI:2139392