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Stx16
Gene Detail
 Symbol
Name
ID
Stx16
syntaxin 16
MGI:1923396
Synonyms 5430410K23Rik, 6330500A18Rik, SYN16
Feature Type protein coding gene
Genetic Map
Chromosome 2
97.85 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr2:174076308-174099771 bp, + strand
From VEGA annotation of GRCm38

  23464 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2791  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Stx16

Human
homologs
Human Homolog STX16, syntaxin 16
NCBI Gene ID 8675
neXtProt AC  NX_O14662
Human Synonyms  SYN16
Human Chr (Location)  20q13.32; chr20:58651253-58679526 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human STX16
Alleles
and
phenotypes
All alleles(7) : Gene trapped(3) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a knock-out allele are viable and fertile and do not exhibit methylation abnormalities or develop a pseudohypoparathyroidism resistance phenotype.
 
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process intracellular protein transport, intra-Golgi vesicle-mediated transport, ...
Component Golgi apparatus, integral component of membrane, ...
Function protein binding, SNAP receptor activity
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (28)    Tissues (6)    Images (14)
Theiler Stages: 23
Assay TypeResults
RNA in situ 28
cDNA source data(80)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(80) cDNA(80)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000016368 (Evidence)
Ensembl Gene ModelENSMUSG00000027522 (Evidence)
Entrez Gene228960 (Evidence)
UniGene277977
DFCITC1583171, TC1598658, TC1698695
DoTSDT.101299437, DT.110694950, DT.55145076, DT.87025307, DT.94260305
NIA Mouse Gene IndexU002921
Consensus CDS ProjectCCDS17147.2
International Mouse Knockout Project StatusStx16
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016368 VEGA Gene Model | MGI Sequence Detail 23464 C57BL/6J ±  kb
transcript OTTMUST00000039395 VEGA | MGI Sequence Detail 3865 Not Applicable 
polypeptide OTTMUSP00000017603 VEGA | MGI Sequence Detail 326 Not Applicable 

For the selected sequences
All sequences(86) RefSeq(24) UniProt(8)
Polymorphisms SNPs within 2kb(89 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006012 Syntaxin/epimorphin, conserved site
InterPro IPR006011 Syntaxin, N-terminal
InterPro IPR000727 Target SNARE coiled-coil domain
InterPro IPR010989 t-SNARE
Protein Ontology PR:000015788 syntaxin-16
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:185743 Cotney J, et al., Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb. Genome Res. 2012 Jun;22(6):1069-80
All references(39)
Other
accession IDs
MGI:1914046, MGI:2139029, MGI:2139392

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory