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Kdm3b
Gene Detail
Symbol

Name
ID
Kdm3b
KDM3B lysine (K)-specific demethylase 3B
MGI:1923356
Synonyms
5830462I21Rik, JHDM2B, Jmjd1b, mKIAA1082
Feature Type
protein coding gene
Genetic Map
Chromosome 18
18.73 cM, cytoband B3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr18:34777008-34839370 bp, + strand
From Ensembl annotation of GRCm38

  62363 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41145  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Kdm3b

Human
homologs
Human Homolog KDM3B, lysine (K)-specific demethylase 3B
NCBI Gene ID 51780
neXtProt AC  NX_Q7LBC6
Human Synonyms  5qNCA, C5orf7, JMJD1B, NET22
Human Chr (Location)  5q31; chr5:138352596-138437027 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(120) : Gene trapped(120)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Kdm3b interacts with 342 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process chromatin modification, oxidation-reduction process, ...
Component nucleus
Function 2,4-dichlorophenoxyacetate alpha-ketoglutarate dioxygenase activity, antioxidant activity, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (17)    Tissues (13)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 9
RT-PCR 8
cDNA source data(16)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(20) cDNA(19) Primer pair(1)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000038773 (Evidence)
Entrez Gene277250 (Evidence)
DFCITC1597106, TC1602337, TC1659222
NIA Mouse Gene IndexU018549
EC1.14.11.-
Consensus CDS ProjectCCDS37761.1
International Mouse Knockout Project StatusKdm3b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038773 Ensembl Gene Model | MGI Sequence Detail 62363 C57BL/6J ±  kb
transcript ENSMUST00000043775 Ensembl | MGI Sequence Detail 7112 Not Applicable 
polypeptide ENSMUSP00000037628 Ensembl | MGI Sequence Detail 1762 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(9) UniProt(7)
Polymorphisms
SNPs within 2kb(258 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003347 JmjC domain
Protein Ontology PR:000009212 lysine-specific demethylase 3B
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:203762 Burton A, et al., Single-cell profiling of epigenetic modifiers identifies PRDM14 as an inducer of cell fate in the mammalian embryo. Cell Rep. 2013 Nov 14;5(3):687-701
All references(38)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory