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Kdm3b
Gene Detail
 Symbol
Name
ID
Kdm3b
KDM3B lysine (K)-specific demethylase 3B
MGI:1923356
Synonyms 5830462I21Rik, JHDM2B, Jmjd1b, mKIAA1082
Feature Type protein coding gene
Genetic Map
Chromosome 18
18.73 cM, cytoband B3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr18:34777008-34839370 bp, + strand
From NCBI annotation of GRCm38

  62363 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41145  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Kdm3b

Human
homologs
Human Homolog KDM3B, lysine (K)-specific demethylase 3B
NCBI Gene ID 51780
neXtProt AC  NX_Q7LBC6
Human Synonyms  5qNCA, C5orf7, JMJD1B, NET22
Human Chr (Location)  5q31; chr5:138352596-138437027 (+)  GRCh38
Alleles
and
phenotypes
All alleles(120) : Gene trapped(120)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process chromatin modification, oxidation-reduction process, ...
Component nucleus
Function 2,4-dichlorophenoxyacetate alpha-ketoglutarate dioxygenase activity, C-19 gibberellin 2-beta-dioxygenase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (24)    Tissues (17)   
Theiler Stages: 2, 3, 4, 5, 26, 28
Assay TypeResults
RNA in situ 9
RT-PCR 15
cDNA source data(16)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(20) cDNA(19) Primer pair(1)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000038773 (Evidence)
Entrez Gene277250 (Evidence)
DFCITC1597106, TC1602337, TC1659222
NIA Mouse Gene IndexU018549
EC1.14.11.-
Consensus CDS ProjectCCDS37761.1
International Mouse Knockout Project StatusKdm3b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 277250 NCBI Gene Model | MGI Sequence Detail 62363 C57BL/6J ±  kb
transcript NM_001081256 RefSeq | MGI Sequence Detail 7112 Not Specified 
polypeptide Q6ZPY7 UniProt | EBI | MGI Sequence Detail 1562 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(9) UniProt(4)
Polymorphisms SNPs within 2kb(258 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003347 JmjC domain
Protein Ontology PR:000009212 lysine-specific demethylase 3B
Graphical View of Protein Domain Structure
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:203762 Burton A, et al., Single-cell profiling of epigenetic modifiers identifies PRDM14 as an inducer of cell fate in the mammalian embryo. Cell Rep. 2013 Nov 14;5(3):687-701
All references(37)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory