Teddm2 Gene Detail

Summary

• Symbol
  Teddm2
• Name
  transmembrane epididymal family member 2
• Synonyms
  5830403L16Rik, e9-2

• Feature Type
  protein coding gene
• IDs
  MGI:1923273
  NCBI Gene: 240817
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr1:153849542-153851195 bp, - strand
• From NCBI annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 65.43 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  49 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923273	protein coding gene	Chr1:153849542-153900228 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0016603	protein coding gene	Chr1:158702610-158762135 (-)
A/J	MGP_AJ_G0016585	protein coding gene	Chr1:152307944-152359863 (-)
AKR/J	MGP_AKRJ_G0016550	protein coding gene	Chr1:157018208-157079930 (-)
BALB/cJ	MGP_BALBcJ_G0016545	protein coding gene	Chr1:152852616-152908652 (-)
C3H/HeJ	MGP_C3HHeJ_G0016370	protein coding gene	Chr1:157125293-157190448 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0017006	protein coding gene	Chr1:164179116-164242738 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014715	protein coding gene	Chr1:144590399-144640363 (-)
CAST/EiJ	MGP_CASTEiJ_G0015949	protein coding gene	Chr1:156645751-156697923 (-)
CBA/J	MGP_CBAJ_G0016344	protein coding gene	Chr1:169974690-170034838 (-)
DBA/2J	MGP_DBA2J_G0016450	protein coding gene	Chr1:151326366-151376669 (-)
FVB/NJ	MGP_FVBNJ_G0016448	protein coding gene	Chr1:149782037-149835058 (-)
LP/J	MGP_LPJ_G0016521	protein coding gene	Chr1:159846979-159906993 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016474	protein coding gene	Chr1:177592437-177653247 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017042	protein coding gene	Chr1:156797956-156856021 (-)
PWK/PhJ	MGP_PWKPhJ_G0015735	protein coding gene	Chr1:150372633-150433669 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0015522	protein coding gene	Chr1:155594764-155649739 (-)
WSB/EiJ	MGP_WSBEiJ_G0016012	protein coding gene	Chr1:156884689-156939194 (-)

Homology

• Human Ortholog
  TEDDM2P, transmembrane epididymal protein 2, pseudogene

• Vertebrate Orthologs
  4

• Human Ortholog
  TEDDM2P, transmembrane epididymal protein 2, pseudogene
  Orthology source: HGNC
• Synonyms
  TEDDM1P1
• Links
  HGNC:42447

  NCBI Gene ID: 127671

  
  
• Chr Location
  1q25.3; chr1:182441697-182442451 (+)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 65346
  1 mouse;1 rat;1 dog;1 macaque, rhesus
  
• HCOP
  human homology predictions: TEDDM2P
• Gene Tree
  Teddm2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Targeted
  1
• Genomic Mutations
  2 involving Teddm2
• Incidental Mutations
  CvDC
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  4

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Teddm2 interacts with 93 markers (Mir7-1, Mir17, Mir18, ...) View All

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  2
• UniProt
  6
• CCDS
  CCDS15378.1

• Ensembl
  ENSMUSG00000045968 (Evidence)
• NCBI Gene
  240817

Representative Sequences			Length	Strain/Species
genomic	240817	NCBI Gene Model | MGI Sequence Detail	1654	C57BL/6J
transcript	NM_178243	RefSeq | MGI Sequence Detail	1659	C57BL/6
polypeptide	NP_839974	RefSeq | MGI Sequence Detail	260	C57BL/6

Protein
Information

• UniProt
  6 Sequences
• InterPro Domains
  IPR006904 Protein of unknown function DUF716

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2675362

References

• Summaries
  All 21

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:121614 Davies B, et al., Novel epididymis-specific mRNAs downregulated by HE6/Gpr64 receptor gene disruption. Mol Reprod Dev. 2007 May;74(5):539-53

TSS for Teddm2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14295	Chr1:153900464-153900492 (-)	-49,283 bp
Tssr14294	Chr1:153900198-153900210 (-)	-49,009 bp
Tssr14291	Chr1:153851189-153851198 (-)	1 bp
Tssr14290	Chr1:153851167-153851174 (-)	24 bp
Tssr14289	Chr1:153851083-153851089 (-)	109 bp
Tssr14288	Chr1:153851048-153851061 (-)	140 bp
Tssr14287	Chr1:153851036-153851044 (-)	155 bp
Tssr14286	Chr1:153850744-153850755 (-)	445 bp