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5830417I10Rik Pseudogene Detail
Summary
  • Symbol
    5830417I10Rik
  • Name
    RIKEN cDNA 5830417I10 gene
  • Synonyms
    3632445O20Rik
Location &
Maps
more
  • Sequence Map
    Chr3:88775216-88825587 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 38.97 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    131 from dbSNP Build 142
  • Strain Annotations
    7
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923272
pseudogene Chr3:88775216-88829371 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0040290
pseudogene Chr3:85950940-86137335 (+)
AKR/J MGP_AKRJ_G0040232
pseudogene Chr3:88074148-88128106 (+)
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0040042
pseudogene Chr3:83698994-83777062 (+)
LP/J MGP_LPJ_G0040138
pseudogene Chr3:89975539-90062516 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0040039
pseudogene Chr3:101660159-101743645 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0038698
pseudogene Chr3:85225676-85300425 (+)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078684 Ensembl Gene Model | MGI Sequence Detail 50372 C57BL/6J ±  kb
transcript ENSMUST00000135913 Ensembl | MGI Sequence Detail 6190 Not Applicable  
polypeptide Q6PB37 UniProt | EBI | MGI Sequence Detail 483 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR033277 GON-4-like protein
    IPR003822 Paired amphipathic helix
    IPR036600 Paired amphipathic helix superfamily
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
Other
Accession IDs
less
MGI:1921279, MGI:3034310
References
more
  • Summaries
    All 21
    Diseases 1
    Phenotypes 9
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/19/2020
MGI 6.15
The Jackson Laboratory