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5830417I10Rik Pseudogene Detail
Summary
  • Symbol
    5830417I10Rik
  • Name
    RIKEN cDNA 5830417I10 gene
  • Synonyms
    3632445O20Rik
Location &
Maps
more
  • Sequence Map
    Chr3:88775216-88825587 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 38.97 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    131 from dbSNP Build 142
  • Strain Annotations
    7
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923272
pseudogene Chr3:88775216-88829371 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0040290
pseudogene Chr3:85950940-86137335 (+)
AKR/J MGP_AKRJ_G0040232
pseudogene Chr3:88074148-88128106 (+)
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0040042
pseudogene Chr3:83698994-83777062 (+)
LP/J MGP_LPJ_G0040138
pseudogene Chr3:89975539-90062516 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0040039
pseudogene Chr3:101660159-101743645 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0038698
pseudogene Chr3:85225676-85300425 (+)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078684 Ensembl Gene Model | MGI Sequence Detail 50372 C57BL/6J ±  kb
transcript ENSMUST00000135913 Ensembl | MGI Sequence Detail 6190 Not Applicable  
polypeptide Q6PB37 UniProt | EBI | MGI Sequence Detail 483 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR033277 GON-4-like protein
    IPR003822 Paired amphipathic helix
    IPR036600 Paired amphipathic helix superfamily
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
Other
Accession IDs
less
MGI:1921279, MGI:3034310
References
more
  • Summaries
    All 21
    Diseases 1
    Phenotypes 9
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/18/2019
MGI 6.14
The Jackson Laboratory