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5830405F06Rik Gene Detail
Summary
  • Symbol
    5830405F06Rik
  • Name
    RIKEN cDNA 5830405F06 gene
  • Feature Type
    lincRNA gene
  • IDs
    MGI:1923265
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr6:41055883-41063102 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, cytoband B2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    116 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923265
lincRNA gene Chr6:41055883-41063102 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006944
lincRNA gene Chr6:39530241-39537464 (+)
A/J MGP_AJ_G0006938
lincRNA gene Chr6:37809613-37816836 (+)
AKR/J MGP_AKRJ_G0006908
lincRNA gene Chr6:39011047-39018270 (+)
BALB/cJ MGP_BALBcJ_G0006914
lincRNA gene Chr6:38022005-38029228 (+)
C3H/HeJ MGP_C3HHeJ_G0006859
lincRNA gene Chr6:39033329-39040552 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007079
lincRNA gene Chr6:40522577-40529796 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006325
lincRNA gene Chr6:35593917-35603221 (+)
CAST/EiJ MGP_CASTEiJ_G0006776
lincRNA gene Chr6:38924547-38932999 (+)
CBA/J MGP_CBAJ_G0006841
lincRNA gene Chr6:42151275-42158486 (+)
DBA/2J MGP_DBA2J_G0006861
lincRNA gene Chr6:37619514-37626717 (+)
FVB/NJ MGP_FVBNJ_G0006884
lincRNA gene Chr6:37394675-37403091 (+)
LP/J MGP_LPJ_G0006944
lincRNA gene Chr6:39542062-39549285 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006864
lincRNA gene Chr6:44397662-44404881 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007081
lincRNA gene Chr6:38975080-38982299 (+)
PWK/PhJ MGP_PWKPhJ_G0006718
lincRNA gene Chr6:37243325-37251796 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006626
lincRNA gene Chr6:38682645-38691332 (+)
WSB/EiJ MGP_WSBEiJ_G0006831
lincRNA gene Chr6:38916782-38925252 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000103586 Ensembl Gene Model | MGI Sequence Detail 7220 C57BL/6J ±  kb
transcript ENSMUST00000192753 Ensembl | MGI Sequence Detail 1755 Not Applicable  
polypeptide Q9D3G4 UniProt | EBI | MGI Sequence Detail 127 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory