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Agmat
Gene Detail
 Symbol
Name
ID
Agmat
agmatine ureohydrolase (agmatinase)
MGI:1923236
Synonyms 5033405N08Rik
Feature Type protein coding gene
Genetic Map
Chromosome 4
74.75 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr4:141746672-141759263 bp, + strand
From VEGA annotation of GRCm38

  12592 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:99855  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: ureohydrolase/formiminoglutamase/proclavaminate amidino hydrolase
Gene Tree: Agmat

Human
homologs
Human Homolog AGMAT, agmatine ureohydrolase (agmatinase)
NCBI Gene ID 79814
neXtProt AC  NX_Q9BSE5
Human Chr (Location)  1p36.21; chr1:15571699-15585110 (-)  GRCh38
Alleles
and
phenotypes
All alleles(3) : Gene trapped(1) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process putrescine biosynthetic process, spermidine biosynthetic process
Component extracellular vesicular exosome, mitochondrion
Function agmatinase activity, hydrolase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (10)    Tissues (10)    Images (3)
Theiler Stages: 23, 25, 28
Assay TypeResults
RNA in situ 10
cDNA source data(34)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(34) cDNA(34)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000009931 (Evidence)
Ensembl Gene ModelENSMUSG00000040706 (Evidence)
Entrez Gene75986 (Evidence)
UniGene30032
DFCITC1605845
DoTSDT.530279
NIA Mouse Gene IndexU005050
EC3.5.3.11
Consensus CDS ProjectCCDS38941.1
International Mouse Knockout Project StatusAgmat
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009931 VEGA Gene Model | MGI Sequence Detail 12592 C57BL/6J ±  kb
transcript OTTMUST00000023069 VEGA | MGI Sequence Detail 1407 Not Applicable 
polypeptide OTTMUSP00000010524 VEGA | MGI Sequence Detail 358 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(6) UniProt(2)
Polymorphisms SNPs within 2kb(194 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR005925 Agmatinase-related
InterPro IPR006035 Ureohydrolase
InterPro IPR023696 Ureohydrolase domain
Protein Ontology PR:000003833 agmatinase, mitochondrial
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory