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Rab30
Gene Detail
Symbol

Name
ID
Rab30
RAB30, member RAS oncogene family
MGI:1923235
Synonyms
5033421K01Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 7
51.60 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:92741603-92837117 bp, + strand
From VEGA annotation of GRCm38

  95515 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:22815  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: RAB30
Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab30

Human
homologs
RAB30, RAB30, member RAS oncogene family
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 27314
neXtProt AC: NX_Q15771

Human Chr (Location): 11q14.1; chr11:82973133-83071923 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(24) : Gene trapped(22) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rab30 interacts with 207 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process Golgi organization, intracellular protein transport, ...
Component cis-Golgi network, cytoplasm, ...
Function GTPase activity, GTP binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (53)    Tissues (9)    Images (21)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 53
cDNA source data(7)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase rab30 ; ZFIN rab30    NEW 
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000022521 (Evidence)
Ensembl Gene Model ENSMUSG00000030643 (Evidence)
Entrez Gene 75985 (Evidence)
DFCI TC1603050, TC1581625
DoTS DT.484418, DT.101323070, DT.94286049
NIA Mouse Gene Index U008381, U008382
Consensus CDS Project CCDS21450.1
International Mouse Phenotyping Consortium Status Rab30
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022521 VEGA Gene Model | MGI Sequence Detail 95515 C57BL/6J ±  kb
transcript OTTMUST00000053932 VEGA | MGI Sequence Detail 2038 Not Applicable 
polypeptide OTTMUSP00000025677 VEGA | MGI Sequence Detail 203 Not Applicable 

For the selected sequences
All sequences(41) RefSeq(6) UniProt(3)
Polymorphisms
SNPs within 2kb(954 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR001806 Small GTPase superfamily
InterPro IPR003579 Small GTPase superfamily, Rab type
InterPro IPR005225 Small GTP-binding protein domain
Protein Ontology PR:000013605 ras-related protein Rab-30
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)
Other
accession IDs
MGI:2141909

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory