5033403H07Rik Gene Detail

Summary

• Symbol
  5033403H07Rik
• Name
  RIKEN cDNA 5033403H07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923204
  NCBI Gene: 75954
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr5:53130354-53149634 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 28.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  629 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923204	lncRNA gene	Chr5:53130322-53157698 (-)
129S1/SvImJ	ENSMUSG00200001272	lncRNA gene	Chr5:48683640-48705086 (-)
A/J	ENSMUSG00195017025	lncRNA gene	Chr5:48057200-48078639 (-)
AKR/J	ENSMUSG00220000887	lncRNA gene	Chr5:48138666-48160106 (-)
BALB/cJ	ENSMUSG00180006991	lncRNA gene	Chr5:47832550-47853988 (-)
C3H/HeJ	ENSMUSG00175015469	lncRNA gene	Chr5:49859936-49881347 (-)
C57BL/6NJ	ENSMUSG00215001865	lncRNA gene	Chr5:48605466-48626914 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013726	unclassified non-coding RNA gene	Chr5:46918662-46936438 (-)
CAST/EiJ	ENSTCUG00005003238	lncRNA gene	Chr5:47959254-47980416 (-)
CBA/J	ENSMUSG00210024463	lncRNA gene	Chr5:48806888-48828313 (-)
DBA/2J	ENSMUSG00185000169	lncRNA gene	Chr5:50685400-50706831 (-)
FVB/NJ	ENSMUSG00205002967	lncRNA gene	Chr5:47659629-47681047 (-)
JF1/MsJ	ENSUMUG00000000746	lncRNA gene	Chr5:55243979-55265176 (-)
LP/J	ENSMUSG00230011007	lncRNA gene	Chr5:55347252-55368698 (-)
NOD/ShiLtJ	ENSMUSG00190000752	lncRNA gene	Chr5:47752357-47773791 (-)
NZO/HlLtJ	ENSMUSG00225028758	lncRNA gene	Chr5:60465114-60486549 (-)
PWK/PhJ	ENSLUMG00010001551	lncRNA gene	Chr5:47904846-47926108 (-)
SPRET/EiJ	ENSMSPG00010013288	lncRNA gene	Chr5:49392037-49414380 (-)
WSB/EiJ	ENSIUOG00005020385	lncRNA gene	Chr5:50708295-50729787 (-)

Homology

• Gene Tree
  5033403H07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  19 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving 5033403H07Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  82
• RefSeq
  1

• Ensembl
  ENSMUSG00000106352 (Evidence)
• NCBI Gene
  75954

Representative Sequences			Length	Strain/Species
genomic	75954	NCBI Gene Model | MGI Sequence Detail	19281	C57BL/6J
transcript	NR_040413	RefSeq | MGI Sequence Detail	479	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 27

  Phenotypes 19
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for 5033403H07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51008	Chr5:53151548-53151563 (-)	-1,922 bp
Tssr51007	Chr5:53151507-53151520 (-)	-1,880 bp
Tssr51006	Chr5:53151477-53151495 (-)	-1,852 bp
Tssr51005	Chr5:53149695-53149713 (-)	-70 bp
Tssr51004	Chr5:53149665-53149693 (-)	-45 bp
Tssr51003	Chr5:53149642-53149659 (-)	-17 bp
Tssr51002	Chr5:53149625-53149640 (-)	1 bp
Tssr51001	Chr5:53149597-53149602 (-)	34 bp