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Cdyl2 Gene Detail
Summary
  • Symbol
    Cdyl2
  • Name
    chromodomain protein, Y chromosome-like 2
  • Synonyms
    1700029M19Rik, 4930453I21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923046
    NCBI Gene: 75796
  • Gene Overview
    MyGene.info: CDYL2
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:116574400-116732991 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 63.15 cM, cytoband E1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    754 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923046
protein coding gene Chr8:116568723-116732991 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034164
protein coding gene Chr8:119661795-119838219 (-)
A/J MGP_AJ_G0034144
protein coding gene Chr8:114801969-114967050 (-)
AKR/J MGP_AKRJ_G0034071
protein coding gene Chr8:118135449-118309619 (-)
BALB/cJ MGP_BALBcJ_G0034138
protein coding gene Chr8:114992378-115166529 (-)
C3H/HeJ MGP_C3HHeJ_G0033849
protein coding gene Chr8:118853340-119025026 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034658
protein coding gene Chr8:123726140-123906349 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031600
protein coding gene Chr8:107744191-107914082 (-)
CAST/EiJ MGP_CASTEiJ_G0033176
protein coding gene Chr8:118646578-118832502 (-)
CBA/J MGP_CBAJ_G0033822
protein coding gene Chr8:128162748-128357117 (-)
DBA/2J MGP_DBA2J_G0033978
protein coding gene Chr8:114025489-114195148 (-)
FVB/NJ MGP_FVBNJ_G0033921
protein coding gene Chr8:113012382-113177526 (-)
LP/J MGP_LPJ_G0034067
protein coding gene Chr8:119797914-119975541 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033968
protein coding gene Chr8:130806011-130988591 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034676
protein coding gene Chr8:118222942-118398696 (-)
PWK/PhJ MGP_PWKPhJ_G0032878
protein coding gene Chr8:113733167-113901655 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032718
protein coding gene Chr8:116901293-117095217 (-)
WSB/EiJ MGP_WSBEiJ_G0033292
protein coding gene Chr8:118927738-119106862 (-)



Homology
more
  • Human Ortholog
    CDYL2, chromodomain Y like 2
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CDYL2, chromodomain Y like 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PCCP1
  • Links
    NCBI Gene ID: 124359
    neXtProt AC: NX_Q8N8U2
    UniProt: Q8N8U2

  • Chr Location
    16q23.2; chr16:80597899-80805043 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031758 Ensembl Gene Model | MGI Sequence Detail 158592 C57BL/6J ±  kb
transcript ENSMUST00000109102 Ensembl | MGI Sequence Detail 2411 Not Applicable  
polypeptide ENSMUSP00000104730 Ensembl | MGI Sequence Detail 503 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 27
    cDNA 27

    Microarray probesets 3
Other
Accession IDs
less
MGI:1917321
References
more
  • Summaries
    All 31
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory