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Aftph
Gene Detail
Symbol

Name
ID
Aftph
aftiphilin
MGI:1923012
Synonyms
9130023F12Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 11
13.25 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:20685084-20741589 bp, - strand
From VEGA annotation of GRCm38

  56506 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9764  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: AFTPH
Gene Tree: Aftph

Human
homologs
AFTPH, aftiphilin
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 54812
neXtProt AC: NX_Q6ULP2

Human Synonyms: Nbla10388

Human Chr (Location): 2p14; chr2:64524305-64593005 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(5) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Aftph interacts with 401 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process intracellular transport, protein transport, ...
Component AP-1 adaptor complex, cytoplasm, ...
Function clathrin binding
External Resources: FuncBase
Expression
cDNA source data(24)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase aftph    NEW 
Molecular
reagents
All nucleic(24) cDNA(24)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000005232 (Evidence)
Ensembl Gene Model ENSMUSG00000049659 (Evidence)
Entrez Gene 216549 (Evidence)
DFCI TC1574771, TC1592359, TC1607141, TC1610167, TC1630448
DoTS DT.101146096, DT.101384587, DT.101384588, DT.110518538, DT.533171, DT.91322268, DT.91580205
NIA Mouse Gene Index U032557
Consensus CDS Project CCDS24459.1, CCDS56761.1, CCDS70146.1
International Mouse Phenotyping Consortium Status Aftph
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005232 VEGA Gene Model | MGI Sequence Detail 56506 C57BL/6J ±  kb
transcript OTTMUST00000011669 VEGA | MGI Sequence Detail 3763 Not Applicable 
polypeptide OTTMUSP00000005417 VEGA | MGI Sequence Detail 931 Not Applicable 

For the selected sequences
All sequences(87) RefSeq(8) UniProt(7)
Polymorphisms
SNPs within 2kb(189 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000003810 aftiphilin
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)
Other
accession IDs
MGI:2144368, MGI:2144378, MGI:2144382, MGI:2144387, MGI:2144439

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory