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Slc10a6 Gene Detail
Summary
  • Symbol
    Slc10a6
  • Name
    solute carrier family 10 (sodium/bile acid cotransporter family), member 6
  • Synonyms
    8430417G17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923000
    NCBI Gene: 75750
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:103605711-103629403 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 50.45 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    248 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923000
protein coding gene Chr5:103605711-103629403 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029801
protein coding gene Chr5:105246305-105270908 (-)
A/J MGP_AJ_G0029765
protein coding gene Chr5:101293995-101317943 (-)
AKR/J MGP_AKRJ_G0029713
protein coding gene Chr5:104559296-104586234 (-)
BALB/cJ MGP_BALBcJ_G0029777
protein coding gene Chr5:102356455-102380071 (-)
C3H/HeJ MGP_C3HHeJ_G0029500
protein coding gene Chr5:104968164-104992540 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030232
protein coding gene Chr5:109531532-109560027 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027467
protein coding gene Chr5:96441868-96465958 (-)
CAST/EiJ MGP_CASTEiJ_G0028911
protein coding gene Chr5:103671563-103697641 (-)
CBA/J MGP_CBAJ_G0029470
protein coding gene Chr5:113358477-113384388 (-)
DBA/2J MGP_DBA2J_G0029614
protein coding gene Chr5:101487021-101510693 (-)
FVB/NJ MGP_FVBNJ_G0029573
protein coding gene Chr5:100286917-100311245 (-)
LP/J MGP_LPJ_G0029702
protein coding gene Chr5:105820718-105844370 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029602
protein coding gene Chr5:118307748-118331967 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030265
protein coding gene Chr5:104094437-104120352 (-)
PWK/PhJ MGP_PWKPhJ_G0028629
protein coding gene Chr5:99939959-99964432 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028464
protein coding gene Chr5:101749588-101773679 (-)
WSB/EiJ MGP_WSBEiJ_G0028989
protein coding gene Chr5:104465861-104489356 (-)



Homology
more
  • Human Ortholog
    SLC10A6, solute carrier family 10 member 6
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SLC10A6, solute carrier family 10 member 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SOAT
  • Links
    NCBI Gene ID: 345274
    neXtProt AC: NX_Q3KNW5
    UniProt: Q3KNW5

  • Chr Location
    4q21.3; chr4:86823468-86849263 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 75750 NCBI Gene Model | MGI Sequence Detail 23693 C57BL/6J ±  kb
transcript NM_029415 RefSeq | MGI Sequence Detail 2124 C57BL/6  
polypeptide Q9CXB2 UniProt | EBI | MGI Sequence Detail 373 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 18
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2141304
References
more
  • Summaries
    All 35
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:237827 Gineste C, et al., In vivo and in vitro investigations of heterozygous nebulin knock-out mice disclose a mild skeletal muscle phenotype. Neuromuscul Disord. 2013 Apr;23(4):357-69

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory