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Egfem1 Gene Detail
Summary
  • Symbol
    Egfem1
  • Name
    EGF-like and EMI domain containing 1
  • Synonyms
    6130401L20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922990
    NCBI Gene: 75740
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:29082023-29691209 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 12.57 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4131 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922990
protein coding gene Chr3:29081653-29691209 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027119
protein coding gene Chr3:26505005-27142073 (+)
A/J MGP_AJ_G0027079
protein coding gene Chr3:26221671-26827298 (+)
AKR/J MGP_AKRJ_G0027048
protein coding gene Chr3:26609851-27214192 (+)
BALB/cJ MGP_BALBcJ_G0027091
protein coding gene Chr3:25900074-26509319 (+)
C3H/HeJ MGP_C3HHeJ_G0026833
protein coding gene Chr3:26649183-27262758 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027537
protein coding gene Chr3:27946785-28619508 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024898
protein coding gene Chr3:24209888-24772307 (+)
CAST/EiJ MGP_CASTEiJ_G0026287
protein coding gene Chr3:26503405-27111825 (+)
CBA/J MGP_CBAJ_G0026811
protein coding gene Chr3:28680448-29357426 (+)
DBA/2J MGP_DBA2J_G0026945
protein coding gene Chr3:25789680-26389623 (+)
FVB/NJ MGP_FVBNJ_G0026913
protein coding gene Chr3:25255749-25843428 (+)
LP/J MGP_LPJ_G0027056
protein coding gene Chr3:27182924-27814508 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026933
protein coding gene Chr3:31241843-31923679 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027596
protein coding gene Chr3:26344444-26967289 (+)
PWK/PhJ MGP_PWKPhJ_G0026020
protein coding gene Chr3:25280183-25880198 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025832
protein coding gene Chr3:25832605-26460759 (+)
WSB/EiJ MGP_WSBEiJ_G0026361
protein coding gene Chr3:26390607-27031024 (+)



Homology
more
  • Human Ortholog
    EGFEM1P, EGF like and EMI domain containing 1, pseudogene
  • Vertebrate Orthologs
    2
  • Human Ortholog
    EGFEM1P, EGF like and EMI domain containing 1, pseudogene
    Orthology source: HGNC
  • Synonyms
    C3orf50, NCRNA00259
  • Links
    NCBI Gene ID: 93556
    UniProt: Q0D2K5

  • Chr Location
    3q26.2; chr3:168249522-168830599 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000063600 Ensembl Gene Model | MGI Sequence Detail 609187 C57BL/6J ±  kb
transcript ENSMUST00000119598 Ensembl | MGI Sequence Detail 2687 Not Applicable  
polypeptide ENSMUSP00000112943 Ensembl | MGI Sequence Detail 590 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 2
References
more
  • Summaries
    All 24
    Diseases 1
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory