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Wdr54 Gene Detail
Summary
  • Symbol
    Wdr54
  • Name
    WD repeat domain 54
  • Synonyms
    1700030E05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922909
    NCBI Gene: 75659
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:83152710-83156440 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 35.94 cM, cytoband D1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    26 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922909
protein coding gene Chr6:83149361-83156440 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030924
protein coding gene Chr6:84156141-84163146 (-)
A/J MGP_AJ_G0030893
protein coding gene Chr6:80941678-80948701 (-)
AKR/J MGP_AKRJ_G0030821
protein coding gene Chr6:83276365-83283356 (-)
BALB/cJ MGP_BALBcJ_G0030903
protein coding gene Chr6:80961959-80968956 (-)
C3H/HeJ MGP_C3HHeJ_G0030807
protein coding gene Chr6:101103082-101110105 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031363
protein coding gene Chr6:86442523-86449532 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028549
protein coding gene Chr6:79300229-79307125 (-)
CAST/EiJ MGP_CASTEiJ_G0030012
protein coding gene Chr6:83279285-83286256 (-)
CBA/J MGP_CBAJ_G0030590
protein coding gene Chr6:89857045-89864054 (-)
DBA/2J MGP_DBA2J_G0030743
protein coding gene Chr6:80260757-80267778 (-)
FVB/NJ MGP_FVBNJ_G0030696
protein coding gene Chr6:79468305-79475292 (-)
LP/J MGP_LPJ_G0030822
protein coding gene Chr6:84149587-84156592 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030732
protein coding gene Chr6:94170392-94177385 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031387
protein coding gene Chr6:83090737-83097759 (-)
PWK/PhJ MGP_PWKPhJ_G0029727
protein coding gene Chr6:79154367-79161737 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029555
protein coding gene Chr6:81933390-81940275 (-)
WSB/EiJ MGP_WSBEiJ_G0030093
protein coding gene Chr6:83526136-83533145 (-)



Homology
more
  • Human Ortholog
    WDR54, WD repeat domain 54
  • Vertebrate Orthologs
    9
  • Human Ortholog
    WDR54, WD repeat domain 54
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 84058
    neXtProt AC: NX_Q9H977
    UniProt: Q9H977

  • Chr Location
    2p13.1; chr2:74421721-74425755 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 75659 NCBI Gene Model | MGI Sequence Detail 3731 C57BL/6J ±  kb
transcript NM_001362120 RefSeq | MGI Sequence Detail 1302 C57BL/6  
polypeptide Q9R0D8 UniProt | EBI | MGI Sequence Detail 334 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 4
References
more
  • Summaries
    All 30
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:50420 Weber JS, et al., High-resolution genetic, physical, and transcript map of the mnd2 region of mouse chromosome 6. Genomics. 1998 Nov 15;54(1):107-15
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory