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Ccdc172 Gene Detail
Summary
  • Symbol
    Ccdc172
  • Name
    coiled-coil domain containing 172
  • Synonyms
    1700011F14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922895
    NCBI Gene: 75645
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:58511993-58553085 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 54.35 cM, cytoband D3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    399 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922895
protein coding gene Chr19:58511993-58553104 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025277
protein coding gene Chr19:58988152-59030796 (+)
A/J MGP_AJ_G0025253
protein coding gene Chr19:56089680-56130207 (+)
AKR/J MGP_AKRJ_G0025222
protein coding gene Chr19:57848915-57889851 (+)
BALB/cJ MGP_BALBcJ_G0025248
protein coding gene Chr19:56160553-56201081 (+)
C3H/HeJ MGP_C3HHeJ_G0025008
protein coding gene Chr19:58091010-58131605 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025691
protein coding gene Chr19:60405922-60448919 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023103
protein coding gene Chr19:54982026-55025979 (+)
CAST/EiJ MGP_CASTEiJ_G0024473
protein coding gene Chr19:58158345-58207818 (+)
CBA/J MGP_CBAJ_G0024988
protein coding gene Chr19:63351079-63393142 (+)
DBA/2J MGP_DBA2J_G0025120
protein coding gene Chr19:55843024-55883932 (+)
FVB/NJ MGP_FVBNJ_G0025081
protein coding gene Chr19:55579315-55620049 (+)
LP/J MGP_LPJ_G0025206
protein coding gene Chr19:58849982-58894004 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025114
protein coding gene Chr19:62607645-62655047 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025749
protein coding gene Chr19:58075661-58117258 (+)
PWK/PhJ MGP_PWKPhJ_G0024221
protein coding gene Chr19:55837706-55884201 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024024
protein coding gene Chr19:56743685-56782731 (+)
WSB/EiJ MGP_WSBEiJ_G0024543
protein coding gene Chr19:58190175-58235457 (+)



Homology
more
  • Human Ortholog
    CCDC172, coiled-coil domain containing 172
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CCDC172, coiled-coil domain containing 172
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C10orf96
  • Links
    NCBI Gene ID: 374355
    neXtProt AC: NX_P0C7W6
    UniProt: P0C7W6

  • Chr Location
    10q25.3; chr10:116324097-116380029 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025090 Ensembl Gene Model | MGI Sequence Detail 41093 C57BL/6J ±  kb
transcript ENSMUST00000069419 Ensembl | MGI Sequence Detail 1009 Not Applicable  
polypeptide ENSMUSP00000068972 Ensembl | MGI Sequence Detail 267 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 23
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:241053 Yamaguchi A, et al., Molecular cloning and subcellular localization of Tektin2-binding protein 1 (Ccdc 172) in rat spermatozoa. J Histochem Cytochem. 2014 Apr;62(4):286-97

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory