1700008F19Rik Gene Detail

Summary

• Symbol
  1700008F19Rik
• Name
  RIKEN cDNA 1700008F19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922881
  NCBI Gene: 75631
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr19:41252525-41259954 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  265 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922881	lncRNA gene	Chr19:41252525-41259954 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  1700008F19Rik
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  6

• Ensembl
  ENSMUSG00000138379 (Evidence)
• NCBI Gene
  75631

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000138379	Ensembl Gene Model | MGI Sequence Detail	7430	C57BL/6J
transcript	ENSMUST00000347560	Ensembl | MGI Sequence Detail	2108	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700008F19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156415	Chr19:41251782-41251817 (+)	-725 bp
Tssr5511	Chr19:41251846-41251862 (+)	-671 bp
Tssr156416	Chr19:41252211-41252220 (+)	-309 bp
Tssr156417	Chr19:41252554-41252621 (+)	63 bp