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Snapc1
Gene Detail
Symbol

Name
ID
Snapc1
small nuclear RNA activating complex, polypeptide 1
MGI:1922877
Synonyms
2700033G17Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 12
32.00 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr12:73964530-73984820 bp, + strand
From Ensembl annotation of GRCm38

  20291 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2317  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SNAPC1
Gene Tree: Snapc1

Human
homologs
SNAPC1, small nuclear RNA activating complex, polypeptide 1, 43kDa
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 6617
neXtProt AC: NX_Q16533

Human Synonyms: PTFgamma, SNAP43

Human Chr (Location): 14q22; chr14:61762357-61796428 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(3) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Snapc1 interacts with 173 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process regulation of transcription, DNA-templated, transcription, DNA-templated
Component nucleus
Function DNA binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (24)    Tissues (15)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 24
cDNA source data(7)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase snapc1 ; ZFIN snapc1a, snapc1b    NEW 
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000021113 (Evidence)
Entrez Gene 75627 (Evidence)
DFCI TC1580101
DoTS DT.486906
NIA Mouse Gene Index U014088
Consensus CDS Project CCDS25978.1
International Mouse Phenotyping Consortium Status Snapc1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021113 Ensembl Gene Model | MGI Sequence Detail 20291 C57BL/6J ±  kb
transcript ENSMUST00000021532 Ensembl | MGI Sequence Detail 2125 Not Applicable 
polypeptide ENSMUSP00000021532 Ensembl | MGI Sequence Detail 389 Not Applicable 

For the selected sequences
All sequences(26) RefSeq(8) UniProt(1)
Polymorphisms
SNPs within 2kb(168 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019188 Small nuclear RNA activating complex (SNAPc), subunit SNAP43
Protein Ontology PR:000015316 snRNA-activating protein complex subunit 1
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)
Other
accession IDs
MGI:2144937

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory