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Snapc1
Gene Detail
 Symbol
Name
ID
Snapc1
small nuclear RNA activating complex, polypeptide 1
MGI:1922877
Synonyms 2700033G17Rik
Feature Type protein coding gene
Genetic Map
Chromosome 12
32.00 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr12:73964530-73984820 bp, + strand
From NCBI annotation of GRCm38

  20291 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2317  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Snapc1

Human
homologs
Human Homolog SNAPC1, small nuclear RNA activating complex, polypeptide 1, 43kDa
NCBI Gene ID 6617
neXtProt AC  NX_Q16533
Human Synonyms  PTFgamma, SNAP43
Human Chr (Location)  14q22; chr14:61762357-61796428 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(3) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Snapc1 interacts with 173 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process regulation of transcription, DNA-templated, transcription, DNA-templated
Component nucleus
Function DNA binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (24)    Tissues (15)    Images (2)
Theiler Stages: 23
Assay TypeResults
RNA in situ 24
cDNA source data(7)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000021113 (Evidence)
Entrez Gene75627 (Evidence)
DFCITC1580101
DoTSDT.486906
NIA Mouse Gene IndexU014088
Consensus CDS ProjectCCDS25978.1
International Mouse Knockout Project StatusSnapc1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 75627 NCBI Gene Model | MGI Sequence Detail 20291 C57BL/6J ±  kb
transcript NM_178392 RefSeq | MGI Sequence Detail 2125 C57BL/6 
polypeptide Q8K0S9 UniProt | EBI | MGI Sequence Detail 389 Not Applicable 

For the selected sequences
All sequences(26) RefSeq(8) UniProt(1)
Polymorphisms SNPs within 2kb(168 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019188 Small nuclear RNA activating complex (SNAPc), subunit SNAP43
Protein Ontology PR:000015316 snRNA-activating protein complex subunit 1
Graphical View of Protein Domain Structure
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)
Other
accession IDs
MGI:2144937

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory