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Snapc1 Gene Detail
Summary
  • Symbol
    Snapc1
  • Name
    small nuclear RNA activating complex, polypeptide 1
  • Synonyms
    2700033G17Rik, 9630050P21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922877
    NCBI Gene: 75627
  • Gene Overview
    MyGene.info: SNAPC1
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:73964477-73985830 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 32.00 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    167 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922877
protein coding gene Chr12:73964477-73988966 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019841
protein coding gene Chr12:73910685-73934057 (+)
A/J MGP_AJ_G0019799
protein coding gene Chr12:71136517-71163677 (+)
AKR/J MGP_AKRJ_G0019774
protein coding gene Chr12:73282010-73303144 (+)
BALB/cJ MGP_BALBcJ_G0019779
protein coding gene Chr12:71615996-71637096 (+)
C3H/HeJ MGP_C3HHeJ_G0019584
protein coding gene Chr12:73745342-73765450 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020231
protein coding gene Chr12:76186814-76208495 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017849
protein coding gene Chr12:68576048-68597108 (+)
CAST/EiJ MGP_CASTEiJ_G0019136
protein coding gene Chr12:68530278-68552170 (+)
CBA/J MGP_CBAJ_G0019554
protein coding gene Chr12:79132489-79155291 (+)
DBA/2J MGP_DBA2J_G0019670
protein coding gene Chr12:71023739-71043862 (+)
FVB/NJ MGP_FVBNJ_G0019657
protein coding gene Chr12:69867210-69888252 (+)
LP/J MGP_LPJ_G0019742
protein coding gene Chr12:73922631-73943655 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019696
protein coding gene Chr12:82212908-82235579 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020266
protein coding gene Chr12:72776934-72797890 (+)
PWK/PhJ MGP_PWKPhJ_G0018901
protein coding gene Chr12:65351137-65373259 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018696
protein coding gene Chr12:67213850-67237538 (+)
WSB/EiJ MGP_WSBEiJ_G0019187
protein coding gene Chr12:73373214-73394844 (+)



Homology
more
  • Human Ortholog
    SNAPC1, small nuclear RNA activating complex polypeptide 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNAPC1, small nuclear RNA activating complex polypeptide 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PTFgamma, SNAP43
  • Links
    NCBI Gene ID: 6617
    neXtProt AC: NX_Q16533
    UniProt: Q16533

  • Chr Location
    14q23.2; chr14:61762357-61796428 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 2317
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SNAPC1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 75627 NCBI Gene Model | MGI Sequence Detail 21354 C57BL/6J ±  kb
    transcript NM_178392 RefSeq | MGI Sequence Detail 6304 C57BL/6  
    polypeptide Q8K0S9 UniProt | EBI | MGI Sequence Detail 389 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • Protein Ontology
      PR:000015316 snRNA-activating protein complex subunit 1
    • InterPro Domains
      IPR019188 Small nuclear RNA activating complex (SNAPc), subunit SNAP43
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 13

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:2144937, MGI:2442994
    References
    more
    • Summaries
      All 34
      Developmental Gene Expression 1
      Gene Ontology 3
      Phenotypes 10
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    10/08/2019
    MGI 6.14
    The Jackson Laboratory