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Tm4sf5 Gene Detail
Summary
  • Symbol
    Tm4sf5
  • Name
    transmembrane 4 superfamily member 5
  • Synonyms
    2010003F10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922854
    NCBI Gene: 75604
  • Gene Overview
    MyGene.info: TM4SF5
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:70505274-70511183 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 42.99 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    53 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922854
protein coding gene Chr11:70505244-70511183 (.)
129S1/SvImJ MGP_129S1SvImJ_G0018598
protein coding gene Chr11:71040137-71046069 (+)
A/J MGP_AJ_G0018566
protein coding gene Chr11:68346103-68352037 (+)
AKR/J MGP_AKRJ_G0018535
protein coding gene Chr11:70398805-70404734 (+)
BALB/cJ MGP_BALBcJ_G0018538
protein coding gene Chr11:68666377-68672309 (+)
C3H/HeJ MGP_C3HHeJ_G0018351
protein coding gene Chr11:70426945-70432936 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018989
protein coding gene Chr11:73192572-73198506 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016634
protein coding gene Chr11:65268714-65274698 (+)
CAST/EiJ MGP_CASTEiJ_G0017906
protein coding gene Chr11:70675223-70681114 (+)
CBA/J MGP_CBAJ_G0018323
protein coding gene Chr11:76471895-76477829 (+)
DBA/2J MGP_DBA2J_G0018433
protein coding gene Chr11:67929721-67935645 (+)
FVB/NJ MGP_FVBNJ_G0018423
protein coding gene Chr11:67574758-67580686 (+)
LP/J MGP_LPJ_G0018503
protein coding gene Chr11:71612486-71620314 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018446
protein coding gene Chr11:77045489-77053335 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019031
protein coding gene Chr11:70660160-70666093 (+)
PWK/PhJ MGP_PWKPhJ_G0017680
protein coding gene Chr11:68569613-68575573 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017470
protein coding gene Chr11:70470640-70479263 (+)
WSB/EiJ MGP_WSBEiJ_G0017960
protein coding gene Chr11:70322099-70328017 (+)



Homology
more
  • Human Ortholog
    TM4SF5, transmembrane 4 L six family member 5
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TM4SF5, transmembrane 4 L six family member 5
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 9032
    neXtProt AC: NX_O14894
    UniProt: O14894

  • Chr Location
    17p13.2; chr17:4771892-4783211 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    15 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 75604 NCBI Gene Model | MGI Sequence Detail 5910 C57BL/6J ±  kb
transcript NM_029360 RefSeq | MGI Sequence Detail 981 C57BL/6  
polypeptide NP_083636 RefSeq | MGI Sequence Detail 196 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR008661 L6 membrane
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
Other
Accession IDs
less
MGI:2144124
References
more
  • Summaries
    All 38
    Developmental Gene Expression 3
    Phenotypes 15
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:237787 Liu X, et al., Decreased expression levels of Ifi genes is associated to the increased resistance to spontaneous arthritis disease in mice deficiency of IL-1RA. BMC Immunol. 2016 Aug 02;17(1):25

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/27/2018
MGI 6.13
The Jackson Laboratory