1810062O18Rik Gene Detail

Summary

• Symbol
  1810062O18Rik
• Name
  RIKEN cDNA 1810062O18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922852
  NCBI Gene: 75602
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:20596361-20620748 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 11.53 cM, cytoband B
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922852	lncRNA gene	Chr14:20596147-20620755 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003223	antisense lncRNA gene	Chr14:13311416-13336954 (+)
A/J	MGP_AJ_G0003199	antisense lncRNA gene	Chr14:12999358-13023935 (+)
AKR/J	MGP_AKRJ_G0003181	antisense lncRNA gene	Chr14:13524694-13549300 (+)
BALB/cJ	MGP_BALBcJ_G0003186	antisense lncRNA gene	Chr14:13103443-13128024 (+)
C3H/HeJ	MGP_C3HHeJ_G0003142	antisense lncRNA gene	Chr14:13462442-13487711 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003329	antisense lncRNA gene	Chr14:13806428-13832869 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002855	antisense lncRNA gene	Chr14:13313410-13337875 (+)
CAST/EiJ	MGP_CASTEiJ_G0003108	antisense lncRNA gene	Chr14:13224088-13248948 (+)
CBA/J	MGP_CBAJ_G0003139	antisense lncRNA gene	Chr14:14508114-14534850 (+)
DBA/2J	MGP_DBA2J_G0003144	antisense lncRNA gene	Chr14:12825224-12849830 (+)
FVB/NJ	MGP_FVBNJ_G0003162	antisense lncRNA gene	Chr14:12719160-12743923 (+)
LP/J	MGP_LPJ_G0003220	antisense lncRNA gene	Chr14:13533803-13558592 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003153	antisense lncRNA gene	Chr14:14282839-14308902 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003330	antisense lncRNA gene	Chr14:13313226-13338203 (+)
PWK/PhJ	MGP_PWKPhJ_G0003066	antisense lncRNA gene	Chr14:12391933-12417638 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003012	antisense lncRNA gene	Chr14:13094218-13119242 (+)
WSB/EiJ	MGP_WSBEiJ_G0003142	antisense lncRNA gene	Chr14:13298959-13323509 (+)

Homology

• Gene Tree
  1810062O18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000084925 (Evidence)
• NCBI Gene
  75602

Representative Sequences			Length	Strain/Species
genomic	75602	NCBI Gene Model | MGI Sequence Detail	24388	C57BL/6J
transcript	NR_033571	RefSeq | MGI Sequence Detail	751	C57BL/6
polypeptide	Q9D8K6	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 1810062O18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124381	Chr14:20596225-20596229 (+)	-134 bp