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Spata9 Gene Detail
Summary
  • Symbol
    Spata9
  • Name
    spermatogenesis associated 9
  • Synonyms
    1700030K01Rik, 4930599C08Rik, A930023H06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922821
    NCBI Gene: 75571
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:75967150-75998972 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 40.95 cM, cytoband C1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    510 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922821
protein coding gene Chr13:75959970-75998987 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020774
protein coding gene Chr13:76512158-76544857 (+)
A/J MGP_AJ_G0020730
protein coding gene Chr13:73907559-73939973 (+)
AKR/J MGP_AKRJ_G0020703
protein coding gene Chr13:76142102-76177703 (+)
BALB/cJ MGP_BALBcJ_G0020726
protein coding gene Chr13:74379416-74419486 (+)
C3H/HeJ MGP_C3HHeJ_G0020520
protein coding gene Chr13:75854892-75885613 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021163
protein coding gene Chr13:79084888-79117864 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018731
protein coding gene Chr13:70725202-70757131 (+)
CAST/EiJ MGP_CASTEiJ_G0020038
protein coding gene Chr13:74941022-74971596 (+)
CBA/J MGP_CBAJ_G0020479
protein coding gene Chr13:82089746-82125619 (+)
DBA/2J MGP_DBA2J_G0020604
protein coding gene Chr13:73619225-73650798 (+)
FVB/NJ MGP_FVBNJ_G0020584
protein coding gene Chr13:72677204-72707916 (+)
LP/J MGP_LPJ_G0020677
protein coding gene Chr13:76779748-76810396 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020613
protein coding gene Chr13:80485143-80517745 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021203
protein coding gene Chr13:75475310-75511504 (+)
PWK/PhJ MGP_PWKPhJ_G0019791
protein coding gene Chr13:72519667-72552751 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019614
protein coding gene Chr13:71843429-71877349 (+)
WSB/EiJ MGP_WSBEiJ_G0020095
protein coding gene Chr13:75980906-76012444 (+)



Homology
more
  • Human Ortholog
    SPATA9, spermatogenesis associated 9
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SPATA9, spermatogenesis associated 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    NYD-SP16
  • Links
    NCBI Gene ID: 83890
    neXtProt AC: NX_Q9BWV2
    UniProt: Q9BWV2

  • Chr Location
    5q15; chr5:95652181-95731848 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021590 Ensembl Gene Model | MGI Sequence Detail 31823 C57BL/6J ±  kb
transcript ENSMUST00000022081 Ensembl | MGI Sequence Detail 1057 Not Applicable  
polypeptide ENSMUSP00000022081 Ensembl | MGI Sequence Detail 252 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
Other
Accession IDs
less
MGI:1922632, MGI:1925205
References
more
  • Summaries
    All 24
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:234235 Miyata H, et al., Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory