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Rsph9
Gene Detail
Symbol

Name
ID
Rsph9
radial spoke head 9 homolog (Chlamydomonas)
MGI:1922814
Synonyms
1700027N10Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 17
22.87 cM, cytoband C
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:46122035-46144216 bp, - strand
From VEGA annotation of GRCm38

  22182 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:12606  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 cattle; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: RSPH9
Gene Tree: Rsph9

Human
homologs
RSPH9, radial spoke head 9 homolog (Chlamydomonas)
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 221421
neXtProt AC: NX_Q9H1X1

Human Synonyms: C6orf206, CILD12, MRPS18AL1

Human Chr (Location): 6p21.1; chr6:43645030-43671013 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human RSPH9

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rsph9 interacts with 19 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process axoneme assembly, cilium movement
Component axoneme, cell projection, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (32)    Tissues (2)    Images (19)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 32
cDNA source data(18)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase rsph9    NEW 
Molecular
reagents
All nucleic(18) cDNA(18)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000028346 (Evidence)
Ensembl Gene Model ENSMUSG00000023966 (Evidence)
Entrez Gene 75564 (Evidence)
UniGene 17993
DFCI TC1582544
DoTS DT.40185826, DT.55169745
NIA Mouse Gene Index U037846
Consensus CDS Project CCDS28820.1
International Mouse Phenotyping Consortium Status Rsph9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028346 VEGA Gene Model | MGI Sequence Detail 22182 C57BL/6J ±  kb
transcript OTTMUST00000070265 VEGA | MGI Sequence Detail 966 Not Applicable 
polypeptide OTTMUSP00000035777 VEGA | MGI Sequence Detail 276 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(8) UniProt(3)
Polymorphisms
SNPs within 2kb(68 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006802 Radial spokehead-like protein
Protein Ontology PR:000014329 radial spoke head protein 9
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:193822 Lumayag S, et al., Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration. Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E507-16
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory