Fam236e Gene Detail

Summary

• Symbol
  Fam236e
• Name
  family with sequence similarity 236, member E
• Synonyms
  1700011M02Rik

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1922693
  NCBI Gene: 75443
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:101952511-101953257 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 45.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922693	protein coding gene	ChrX:101952511-101953257 (+)
129S1/SvImJ	ENSMUSG00200037706	protein coding gene	ChrX:83702962-83703701 (+)
A/J	ENSMUSG00195038703	protein coding gene	ChrX:87457761-87458500 (+)
AKR/J	ENSMUSG00220037522	protein coding gene	ChrX:82131584-82132330 (+)
BALB/cJ	ENSMUSG00180041061	protein coding gene	ChrX:84135109-84135848 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215044553	protein coding gene	ChrX:84322156-84322902 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033305	protein coding gene	ChrX:97166517-97167255 (+)
CAST/EiJ	ENSTCUG00005039961	protein coding gene	ChrX:85185230-85185976 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185041121	protein coding gene	ChrX:97044144-97044890 (+)
FVB/NJ	ENSMUSG00205027730	protein coding gene	ChrX:83691386-83692125 (+)
JF1/MsJ	ENSUMUG00000022727	protein coding gene	ChrX:117629454-117630198 (+)
LP/J	ENSMUSG00230038885	protein coding gene	ChrX:103736374-103737113 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225044933	protein coding gene	ChrX:108863771-108864517 (+)
PWK/PhJ	ENSLUMG00010033115	protein coding gene	ChrX:82945315-82946059 (+)
SPRET/EiJ	ENSMSPG00010039512	protein coding gene	ChrX:87167752-87168499 (+)
WSB/EiJ	ENSIUOG00005039571	protein coding gene	ChrX:84267732-84268478 (+)

Homology

• Human Ortholog
  FAM236A, family with sequence similarity 236 member A

• Vertebrate Orthologs
  4

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  FAM236A, family with sequence similarity 236 member A
  
• Synonyms
  DMRTC1-AS1, LINC00684
• Links
  HGNC:44268

  NCBI Gene ID: 100129407

  UniProt: A0A1B0GUQ0

  
  
• Chr Location
  Xq13.1; chrX:72938163-72938958 (+)  GRCh38

---

• Human Ortholog
  FAM236B, family with sequence similarity 236 member B
  
• Links
  HGNC:52640

  NCBI Gene ID: 100132304

  UniProt: A0A1B0GV22

  
  
• Chr Location
  Xq13.1; chrX:72781865-72782660 (-)  GRCh38

---

• Human Ortholog
  FAM236D, family with sequence similarity 236 member D
  
• Links
  HGNC:52642

  NCBI Gene ID: 105373251

  UniProt: A0A1B0GTK5

  
  
• Chr Location
  chrX:72807425-72808210 (-)  GRCh38

---

• MGI Vertebrate Homology
  Fam236e stringent orthology
  3 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: FAM236A, FAM236B, FAM236D
• Gene Tree
  Fam236e
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000079476 (Evidence)
• NCBI Gene
  75443

Representative Sequences			Length	Strain/Species
genomic	75443	NCBI Gene Model | MGI Sequence Detail	747	C57BL/6J
transcript	NR_073044	RefSeq | MGI Sequence Detail	420	C57BL/6
polypeptide	B1AX35	UniProt | EBI | MGI Sequence Detail	88	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

Other
Accession IDs

MGI:7443969

References

• Summaries
  All 15

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Fam236e:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5660	ChrX:101952505-101952516 (+)	0 bp