1700006F04Rik Gene Detail

Summary

• Symbol
  1700006F04Rik
• Name
  RIKEN cDNA 1700006F04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922682
  NCBI Gene: 75432
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:119986639-119988976 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922682	lncRNA gene	Chr14:119986586-119988995 (+)
129S1/SvImJ	ENSMUSG00200025343	lncRNA gene	Chr14:108860503-108862842 (+)
A/J	ENSMUSG00195032322	lncRNA gene	Chr14:108616256-108618596 (+)
AKR/J	ENSMUSG00220008038	lncRNA gene	Chr14:108412189-108414529 (+)
BALB/cJ	ENSMUSG00180029619	lncRNA gene	Chr14:108108160-108110500 (+)
C3H/HeJ	ENSMUSG00175005920	lncRNA gene	Chr14:110047682-110050021 (+)
C57BL/6NJ	ENSMUSG00215028580	lncRNA gene	Chr14:108253179-108255518 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005068	lincRNA gene	Chr14:108913177-108915526 (+)
CAST/EiJ	ENSTCUG00005007500	lncRNA gene	Chr14:109685299-109687639 (+)
CBA/J	ENSMUSG00210027864	lncRNA gene	Chr14:109008770-109011109 (+)
DBA/2J	ENSMUSG00185014272	lncRNA gene	Chr14:114165270-114167609 (+)
FVB/NJ	ENSMUSG00205008400	lncRNA gene	Chr14:107721187-107723526 (+)
JF1/MsJ	ENSUMUG00000030954	lncRNA gene	Chr14:125193319-125195659 (+)
LP/J	ENSMUSG00230013353	lncRNA gene	Chr14:126148417-126150756 (+)
NOD/ShiLtJ	ENSMUSG00190026978	lncRNA gene	Chr14:108822428-108824768 (+)
NZO/HlLtJ	ENSMUSG00225029284	lncRNA gene	Chr14:116190547-116192886 (+)
PWK/PhJ	ENSLUMG00010031311	lncRNA gene	Chr14:108104532-108106872 (+)
SPRET/EiJ	ENSMSPG00010012686	lncRNA gene	Chr14:112338507-112338801 (+)
WSB/EiJ	ENSIUOG00005031953	lncRNA gene	Chr14:108031627-108033966 (+)

Homology

• Gene Tree
  1700006F04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700006F04Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000100274 (Evidence)
• NCBI Gene
  75432

Representative Sequences			Length	Strain/Species
genomic	75432	NCBI Gene Model | MGI Sequence Detail	2338	C57BL/6J
transcript	NR_045621	RefSeq | MGI Sequence Detail	439	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700006F04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127212	Chr14:119986638-119986650 (+)	5 bp