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Secisbp2
Gene Detail
 Symbol
Name
ID
Secisbp2
SECIS binding protein 2
MGI:1922670
Synonyms 2210413N07Rik, 2810012K13Rik, SBP2
Feature Type protein coding gene
Genetic Map
Chromosome 13
26.12 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr13:51651697-51684044 bp, + strand
From VEGA annotation of GRCm38

  32348 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11415  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Secisbp2

Human
homologs
Human Homolog SECISBP2, SECIS binding protein 2
NCBI Gene ID 79048
neXtProt AC  NX_Q96T21
Human Synonyms  SBP2
Human Chr (Location)  9q22.2; chr9:89318473-89359663 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human SECISBP2
Mutations,
alleles, and
phenotypes
All mutations/alleles(16) : Gene trapped(15) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Secisbp2 interacts with 120 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process biological_process
Component mitochondrion, nucleus, ...
Function mRNA 3'-UTR binding, poly(A) RNA binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (8)    Tissues (4)    Images (3)
Theiler Stages: 27, 28
Assay TypeResults
RNA in situ 8
cDNA source data(54)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(56) cDNA(56)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000020967 (Evidence)
Ensembl Gene ModelENSMUSG00000035139 (Evidence)
Entrez Gene75420 (Evidence)
UniGene275981
DFCITC1582647, TC1598391, TC1642067
DoTSDT.101129080, DT.522817, DT.94256723
NIA Mouse Gene IndexU014844
Consensus CDS ProjectCCDS36665.1
International Mouse Knockout Project StatusSecisbp2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000020967 VEGA Gene Model | MGI Sequence Detail 32348 C57BL/6J ±  kb
transcript OTTMUST00000049571 VEGA | MGI Sequence Detail 3328 Not Applicable 
polypeptide OTTMUSP00000022992 VEGA | MGI Sequence Detail 858 Not Applicable 

For the selected sequences
All sequences(56) RefSeq(13) UniProt(3)
Polymorphisms SNPs within 2kb(190 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45
Protein Ontology PR:000014601 selenocysteine insertion sequence-binding protein 2
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:192960 Gonzalez-Flores JN, et al., The selenocysteine-specific elongation factor contains a novel and multi-functional domain. J Biol Chem. 2012 Nov 9;287(46):38936-45
All references(41)
Other
accession IDs
MGI:1919610

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory