Secisbp2
Gene Detail

Symbol Name ID

Secisbp2 SECIS binding protein 2 MGI:1922670

Synonyms

2210413N07Rik, 2810012K13Rik, SBP2

Feature Type

protein coding gene

Genetic Map

Chromosome 13

26.12 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr13:51651697-51684044 bp, + strand From VEGA annotation of GRCm38   32348 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:11415  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Secisbp2

Human homologs

Human Homolog		SECISBP2, SECIS binding protein 2
NCBI Gene ID		79048
neXtProt AC		NX_Q96T21
Human Synonyms		SBP2
Human Chr (Location)		9q22.2; chr9:91933412-91974561 (+)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human SECISBP2

Alleles and phenotypes

All alleles(16) : Targeted(1) Gene trapped(15)

Gene Ontology (GO) classifications

All GO classifications: (5 annotations)

Process	biological_process
Component	mitochondrion
Function	mRNA 3'-UTR binding, RNA binding

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (8)    Tissues (3)    Images (3)
Theiler Stages: 28

Assay Type	Results
RNA in situ	8

cDNA source data(55)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(57) cDNA(57)
Microarray probesets(5)

Other database links

VEGA Gene Model	OTTMUSG00000020967 (Evidence)
Ensembl Gene Model	ENSMUSG00000035139 (Evidence)
Entrez Gene	75420 (Evidence)
UniGene	275981
DFCI	TC1582647, TC1598391, TC1642067
DoTS	DT.101129080, DT.522817, DT.94256723
NIA Mouse Gene Index	U014844
Consensus CDS Project	CCDS36665.1
International Mouse Knockout Project Status	Secisbp2

Sequences

Length	Strain/Species
genomic	OTTMUSG00000020967	VEGA Gene Model | MGI Sequence Detail	32348	C57BL/6J
transcript	OTTMUST00000049571	VEGA | MGI Sequence Detail	3328	Not Applicable
polypeptide	OTTMUSP00000022992	VEGA | MGI Sequence Detail	858	Not Applicable

All sequences(45) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(188 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45
Protein Ontology	PR:000014601	SECIS-binding protein 2

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:192960 Gonzalez-Flores JN, et al., The selenocysteine-specific elongation factor contains a novel and multi-functional domain. J Biol Chem. 2012 Nov 9;287(46):38936-45
All references(41)

Other accession IDs

MGI:1919610