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Ccnl1
Gene Detail
Symbol

Name
ID
Ccnl1
cyclin L1
MGI:1922664
Synonyms
2610030E23Rik, ania-6a
Feature Type
protein coding gene
Genetic Map
Chromosome 3
30.25 cM, cytoband E1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr3:65946151-65958249 bp, - strand
From VEGA annotation of GRCm38

  12099 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10541  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 chicken; 1 zebrafish

HCOP human homology predictions: CCNL1
Protein SuperFamily: cyclin, L type
Gene Tree: Ccnl1

Human
homologs
CCNL1, cyclin L1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 57018
neXtProt AC: NX_Q9UK58

Human Synonyms: ania-6a, ANIA6A, BM-001, PRO1073

Human Chr (Location): 3q25.31; chr3:157146364-157160693 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(2) Targeted(4)
Incidental mutations (data from CvDC )
Interactions
Ccnl1 interacts with 377 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (1)    Tissues (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RT-PCR 1
cDNA source data(10)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase ccnl1 ; ZFIN ccnl1b    NEW 
Molecular
reagents
All nucleic(11) cDNA(10) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000029434 (Evidence)
Ensembl Gene Model ENSMUSG00000027829 (Evidence)
Entrez Gene 56706 (Evidence)
DFCI TC1575685, TC1582650, TC1603111, TC1648450, TC1678920
DoTS DT.101409001, DT.103553032, DT.40144194, DT.91281201, DT.94339717, DT.94339725
NIA Mouse Gene Index U024119
Consensus CDS Project CCDS17390.1
International Mouse Phenotyping Consortium Status Ccnl1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029434 VEGA Gene Model | MGI Sequence Detail 12099 C57BL/6J ±  kb
transcript OTTMUST00000072934 VEGA | MGI Sequence Detail 2169 Not Applicable 
polypeptide OTTMUSP00000037667 VEGA | MGI Sequence Detail 532 Not Applicable 

For the selected sequences
All sequences(101) RefSeq(17) UniProt(6)
Polymorphisms
SNPs within 2kb(39 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR015429 Cyclin C/H/T/L
InterPro IPR013763 Cyclin-like
InterPro IPR015431 Cyclin L, metazoa/fungi
InterPro IPR006671 Cyclin, N-terminal
Protein Ontology PR:000005136 cyclin-L1
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:2139871

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory