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Ccnl1 Gene Detail
Summary
  • Symbol
    Ccnl1
  • Name
    cyclin L1
  • Synonyms
    2610030E23Rik, ania-6a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922664
    NCBI Gene: 56706
  • Gene Overview
    MyGene.info: CCNL1
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:65946151-65958249 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 30.25 cM, cytoband E1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    39 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922664
protein coding gene Chr3:65945908-65958394 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027274
protein coding gene Chr3:65080356-65092454 (-)
A/J MGP_AJ_G0027235
protein coding gene Chr3:63195467-63207565 (-)
AKR/J MGP_AKRJ_G0027204
protein coding gene Chr3:64482972-64495071 (-)
BALB/cJ MGP_BALBcJ_G0027247
protein coding gene Chr3:63011990-63024336 (-)
C3H/HeJ MGP_C3HHeJ_G0026991
protein coding gene Chr3:64770633-64782731 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027693
protein coding gene Chr3:67528954-67541052 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025046
protein coding gene Chr3:59581671-59594043 (-)
CAST/EiJ MGP_CASTEiJ_G0026438
protein coding gene Chr3:64743950-64756076 (-)
CBA/J MGP_CBAJ_G0026966
protein coding gene Chr3:69620775-69632874 (-)
DBA/2J MGP_DBA2J_G0027102
protein coding gene Chr3:62691660-62703759 (-)
FVB/NJ MGP_FVBNJ_G0027070
protein coding gene Chr3:61343973-61356070 (-)
LP/J MGP_LPJ_G0027210
protein coding gene Chr3:65999549-66011647 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027088
protein coding gene Chr3:74225400-74237497 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027751
protein coding gene Chr3:64392986-64405084 (-)
PWK/PhJ MGP_PWKPhJ_G0026172
protein coding gene Chr3:62444462-62456567 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025988
protein coding gene Chr3:63588180-63600280 (-)
WSB/EiJ MGP_WSBEiJ_G0026516
protein coding gene Chr3:64534747-64546846 (-)



Homology
more
  • Human Ortholog
    CCNL1, cyclin L1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CCNL1, cyclin L1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ania-6a, ANIA6A, BM-001, PRO1073
  • Links
    NCBI Gene ID: 57018
    neXtProt AC: NX_Q9UK58
    UniProt: Q9UK58

  • Chr Location
    3q25.31; chr3:157146502-157160760 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    2
  • Radiation induced
    1
  • Targeted
    4
  • Genomic Mutations
    2 involving Ccnl1
  • Incidental Mutations
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027829 Ensembl Gene Model | MGI Sequence Detail 12099 C57BL/6J ±  kb
transcript ENSMUST00000029416 Ensembl | MGI Sequence Detail 2169 Not Applicable  
polypeptide ENSMUSP00000029416 Ensembl | MGI Sequence Detail 532 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 11
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2139871
References
more
  • Summaries
    All 39
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 8
    Phenotypes 10
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory