4930555A03Rik Gene Detail

Summary

• Symbol
  4930555A03Rik
• Name
  RIKEN cDNA 4930555A03 gene
• Synonyms
  2210404B08Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1922587
  NCBI Gene: 100504653
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr3:150999799-151002487 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 76.76 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922587	lncRNA gene	Chr3:150999739-151002983 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006366	lincRNA gene	Chr3:155069451-155071966 (+)
A/J	MGP_AJ_G0006359	lincRNA gene	Chr3:149454309-149456824 (+)
AKR/J	MGP_AKRJ_G0006334	lincRNA gene	Chr3:153425026-153427541 (+)
BALB/cJ	MGP_BALBcJ_G0006333	lincRNA gene	Chr3:149305397-149307912 (+)
C3H/HeJ	MGP_C3HHeJ_G0006284	lincRNA gene	Chr3:153831406-153833921 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006498	lincRNA gene	Chr3:160216981-160219496 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005793	lincRNA gene	Chr3:144348035-144350569 (+)
CAST/EiJ	MGP_CASTEiJ_G0006218	lincRNA gene	Chr3:153900454-153902975 (+)
CBA/J	MGP_CBAJ_G0006267	lincRNA gene	Chr3:165908294-165910809 (+)
DBA/2J	MGP_DBA2J_G0006288	lincRNA gene	Chr3:148584064-148586579 (+)
FVB/NJ	MGP_FVBNJ_G0006310	lincRNA gene	Chr3:145981960-145984475 (+)
LP/J	MGP_LPJ_G0006370	lincRNA gene	Chr3:156444807-156447322 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006300	lincRNA gene	Chr3:174478929-174481444 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006504	lincRNA gene	Chr3:153097940-153100455 (+)
PWK/PhJ	MGP_PWKPhJ_G0006155	lincRNA gene	Chr3:148484878-148487393 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006068	lincRNA gene	Chr3:151249576-151252111 (+)
WSB/EiJ	MGP_WSBEiJ_G0006264	lincRNA gene	Chr3:154097794-154100322 (+)

Homology

• Gene Tree
  4930555A03Rik
  

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  4

• Ensembl
  ENSMUSG00000106157 (Evidence)
• NCBI Gene
  100504653

Representative Sequences			Length	Strain/Species
genomic	100504653	NCBI Gene Model | MGI Sequence Detail	2689	C57BL/6J
transcript	NR_166403	RefSeq | MGI Sequence Detail	2106	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:1922916

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930555A03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32380	Chr3:150999778-150999815 (+)	-2 bp
Tssr32381	Chr3:150999840-150999855 (+)	49 bp
Tssr32382	Chr3:150999866-150999880 (+)	74 bp
Tssr1093	Chr3:151000156-151000166 (+)	362 bp
Tssr1094	Chr3:151000168-151000183 (+)	377 bp