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Taf1d Gene Detail
Summary
  • Symbol
    Taf1d
  • Name
    TATA-box binding protein associated factor, RNA polymerase I, D
  • Synonyms
    2810003M17Rik, 4930553M18Rik, 5930426I11Rik, Josd3, TAFI41, TAF(I)41
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922566
    NCBI Gene: 75316
  • Gene Overview
    MyGene.info: TAF1D
Location & Maps
more
  • Sequence Map
    Chr9:15306214-15312104 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      5891 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 4.78 cM, cytoband A3
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    TAF1D, TATA-box binding protein associated factor, RNA polymerase I subunit D
  • Vertebrate Orthologs
    7
  • Human Ortholog
    TAF1D, TATA-box binding protein associated factor, RNA polymerase I subunit D
    Orthology source: HGNC, HomoloGene
  • Synonyms
    JOSD3, RAFI41, TAFI41, TAF(I)41
  • Links
    NCBI Gene ID: 79101
    neXtProt AC: NX_Q9H5J8

  • Chr Location
    11q21; chr11:93735929-93741537 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031939 Ensembl Gene Model | MGI Sequence Detail 5891 C57BL/6J ±  kb
transcript ENSMUST00000034415 Ensembl | MGI Sequence Detail 1148 Not Applicable  
polypeptide ENSMUSP00000034415 Ensembl | MGI Sequence Detail 322 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    41 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000016023 TATA box-binding protein-associated factor RNA polymerase I subunit D
  • InterPro Domains
    IPR027976 TATA box-binding protein-associated factor 1D
Molecular
Reagents
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  • All nucleic 27
    cDNA 26
    Primer pair 1

    Microarray probesets 12
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory