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Tmco5b Gene Detail
Summary
  • Symbol
    Tmco5b
  • Name
    transmembrane and coiled-coil domains 5B
  • Synonyms
    4930563P21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922525
    NCBI Gene: 75275
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:113285732-113297190 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 57.30 cM, cytoband E4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    111 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922525
protein coding gene Chr2:113285095-113297190 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026295
protein coding gene Chr2:115762173-115775911 (+)
A/J MGP_AJ_G0026256
protein coding gene Chr2:111028048-111039655 (+)
AKR/J MGP_AKRJ_G0026235
protein coding gene Chr2:114133237-114146082 (+)
BALB/cJ MGP_BALBcJ_G0026269
protein coding gene Chr2:111272851-111285263 (+)
C3H/HeJ MGP_C3HHeJ_G0026014
protein coding gene Chr2:114541251-114558385 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026716
protein coding gene Chr2:119578343-119591155 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024096
protein coding gene Chr2:106223066-106234622 (+)
CAST/EiJ MGP_CASTEiJ_G0025477
protein coding gene Chr2:114826534-114842209 (+)
CBA/J MGP_CBAJ_G0025991
protein coding gene Chr2:123774699-123789259 (+)
DBA/2J MGP_DBA2J_G0026130
protein coding gene Chr2:110502422-110514545 (+)
FVB/NJ MGP_FVBNJ_G0026092
protein coding gene Chr2:109355600-109366992 (+)
LP/J MGP_LPJ_G0026231
protein coding gene Chr2:116054415-116067109 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026111
protein coding gene Chr2:128143330-128162784 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026771
protein coding gene Chr2:114197240-114213484 (+)
PWK/PhJ MGP_PWKPhJ_G0025213
protein coding gene Chr2:109999051-110010974 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025012
protein coding gene Chr2:113358863-113371233 (+)
WSB/EiJ MGP_WSBEiJ_G0025546
protein coding gene Chr2:115013526-115029625 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    4
  • Genomic Mutations
    2 involving Tmco5b
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041255 Ensembl Gene Model | MGI Sequence Detail 11459 C57BL/6J ±  kb
transcript ENSMUST00000040856 Ensembl | MGI Sequence Detail 1237 Not Applicable  
polypeptide ENSMUSP00000042247 Ensembl | MGI Sequence Detail 307 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000032597 transmembrane and coiled-coil domain-containing protein 5B
  • InterPro Domains
    IPR026617 Transmembrane and coiled-coil domain-containing protein 2/5
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:123068 Pavel E, et al., Analysis of a new allele of limb deformity (ld) reveals tissue- and age-specific transcriptional effects of the Ld Global Control Region. Int J Dev Biol. 2007;51(4):273-81

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/12/2021
MGI 6.16
The Jackson Laboratory