Hmgb4os Gene Detail

Summary

• Symbol
  Hmgb4os
• Name
  high-mobility group box 4, opposite strand
• Synonyms
  4930546G22Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1922492
  NCBI Gene: 75242
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:128154837-128156783 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 61.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922492	antisense lncRNA gene	Chr4:128154837-128156783 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003961	antisense lncRNA gene	Chr4:130063505-130065451 (+)
A/J	MGP_AJ_G0003942	antisense lncRNA gene	Chr4:124931220-124933170 (+)
AKR/J	MGP_AKRJ_G0003919	antisense lncRNA gene	Chr4:128378558-128380504 (+)
BALB/cJ	MGP_BALBcJ_G0003928	antisense lncRNA gene	Chr4:125506108-125508058 (+)
C3H/HeJ	MGP_C3HHeJ_G0003875	antisense lncRNA gene	Chr4:128431455-128433405 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004076	antisense lncRNA gene	Chr4:135002162-135004108 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003563	antisense lncRNA gene	Chr4:118055917-118057904 (+)
CAST/EiJ	MGP_CASTEiJ_G0003838	antisense lncRNA gene	Chr4:126599606-126601607 (+)
CBA/J	MGP_CBAJ_G0003868	antisense lncRNA gene	Chr4:138287062-138289012 (+)
DBA/2J	MGP_DBA2J_G0003884	antisense lncRNA gene	Chr4:125362936-125364886 (+)
FVB/NJ	MGP_FVBNJ_G0003903	antisense lncRNA gene	Chr4:124101971-124103917 (+)
LP/J	MGP_LPJ_G0003964	antisense lncRNA gene	Chr4:130369525-130371471 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003891	antisense lncRNA gene	Chr4:143243499-143245445 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004071	antisense lncRNA gene	Chr4:128745775-128747721 (+)
PWK/PhJ	MGP_PWKPhJ_G0003792	antisense lncRNA gene	Chr4:121915626-121917864 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003738	antisense lncRNA gene	Chr4:124601508-124603503 (+)
WSB/EiJ	MGP_WSBEiJ_G0003874	antisense lncRNA gene	Chr4:128850474-128852420 (+)

Homology

• Gene Tree
  Hmgb4os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Hmgb4os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085717 (Evidence)
• NCBI Gene
  75242

Representative Sequences			Length	Strain/Species
genomic	75242	NCBI Gene Model | MGI Sequence Detail	1947	C57BL/6J
transcript	NR_130980	RefSeq | MGI Sequence Detail	518	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12