4930533L02Rik Gene Detail

Summary

• Symbol
  4930533L02Rik
• Name
  RIKEN cDNA 4930533L02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922457
  NCBI Gene: 75207
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:124917531-124918690 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 68.72 cM, cytoband F3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922457	lncRNA gene	Chr7:124917531-124918690 (+)
129S1/SvImJ	ENSMUSG00200022673	unclassified gene	Chr7:111427875-111429034 (+)
129S1/SvImJ	ENSMUSG00200020946	protein coding gene	Chr7:111427839-111438939 (+)
A/J	ENSMUSG00195041476	protein coding gene	Chr7:115954464-115965571 (+)
A/J	ENSMUSG00195045513	unclassified gene	Chr7:115954500-115955659 (+)
AKR/J	ENSMUSG00220027433	unclassified gene	Chr7:109367659-109368818 (+)
AKR/J	ENSMUSG00220024905	protein coding gene	Chr7:109367623-109378755 (+)
BALB/cJ	ENSMUSG00180014152	unclassified gene	Chr7:112608289-112609448 (+)
BALB/cJ	ENSMUSG00180013036	protein coding gene	Chr7:112608253-112619385 (+)
C3H/HeJ	ENSMUSG00175015928	protein coding gene	Chr7:113345224-113356328 (+)
C3H/HeJ	ENSMUSG00175020180	unclassified gene	Chr7:113345260-113346419 (+)
C57BL/6NJ	ENSMUSG00215038639	unclassified gene	Chr7:112625031-112626190 (+)
C57BL/6NJ	ENSMUSG00215015313	protein coding gene	Chr7:112624995-112636100 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001952	unclassified gene	Chr7:127339730-127340893 (+)
CAST/EiJ	ENSTCUG00005049286	unclassified gene	Chr7:115839716-115840875 (+)
CBA/J	ENSMUSG00210023681	unclassified gene	Chr7:113106221-113107380 (+)
CBA/J	ENSMUSG00210022505	protein coding gene	Chr7:113106185-113117289 (+)
DBA/2J	ENSMUSG00185036504	protein coding gene	Chr7:117419054-117430158 (+)
DBA/2J	ENSMUSG00185050880	unclassified gene	Chr7:117419090-117420249 (+)
FVB/NJ	ENSMUSG00205044209	unclassified gene	Chr7:113063633-113064792 (+)
FVB/NJ	ENSMUSG00205016108	protein coding gene	Chr7:113063597-113074701 (+)
JF1/MsJ	ENSUMUG00000052298	unclassified gene	Chr7:122456182-122457342 (+)
LP/J	ENSMUSG00230052560	protein coding gene	Chr7:123527838-123538938 (+)
LP/J	ENSMUSG00230053153	unclassified gene	Chr7:123527874-123529033 (+)
NOD/ShiLtJ	ENSMUSG00190012683	protein coding gene	Chr7:113272395-113283499 (+)
NOD/ShiLtJ	ENSMUSG00190021016	unclassified gene	Chr7:113272431-113273590 (+)
NZO/HlLtJ	ENSMUSG00225012678	unclassified gene	Chr7:121766550-121767709 (+)
NZO/HlLtJ	ENSMUSG00225011692	protein coding gene	Chr7:121766514-121777620 (+)
PWK/PhJ	ENSLUMG00010013384	unclassified gene	Chr7:111612751-111613910 (+)
SPRET/EiJ	ENSMSPG00010012810	unclassified gene	Chr7:112855910-112857084 (+)
WSB/EiJ	ENSIUOG00005031846	unclassified gene	Chr7:113970695-113971854 (+)

Homology

• Gene Tree
  4930533L02Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• UniProt
  1

• Ensembl
  ENSMUSG00000104236 (Evidence)
• NCBI Gene
  75207

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104236	Ensembl Gene Model | MGI Sequence Detail	1160	C57BL/6J
transcript	AK015957	GenBank | ENA | DDBJ | MGI Sequence Detail	1160	C57BL/6J
polypeptide	Q9D500	UniProt | EBI | MGI Sequence Detail	124	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930533L02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68965	Chr7:124917506-124917515 (+)	-20 bp