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H2bu1-ps Pseudogene Detail
Summary
  • Symbol
    H2bu1-ps
  • Name
    H2B.U histone 1, pseudogene
  • Synonyms
    4930534G10Rik, Hist3h2bb-ps
  • Feature Type
    pseudogene
  • IDs
    MGI:1922442
    NCBI Gene: 382522
  • Member of
    Hist3 cluster
  • Gene Overview
    MyGene.info: H2BU1
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:58954048-58954512 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 36.38 cM, cytoband B2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    82 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922442
pseudogene Chr11:58954048-58954512 (-)
129S1/SvImJ MGP_129S1SvImJ_G0010730
pseudogene Chr11:58735835-58736299 (-)
A/J MGP_AJ_G0010725
pseudogene Chr11:56495557-56496021 (-)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0010698
pseudogene Chr11:56862573-56863037 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0010973
pseudogene Chr11:60612054-60612518 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0009602
pseudogene Chr11:53768853-53769317 (-)
CAST/EiJ MGP_CASTEiJ_G0010432
pseudogene Chr11:58400758-58401222 (-)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0010638
pseudogene Chr11:55821192-55821656 (-)
LP/J MGP_LPJ_G0010710
pseudogene Chr11:59351683-59352147 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0010613
pseudogene Chr11:64411623-64412087 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0010946
pseudogene Chr11:58400903-58401367 (-)
PWK/PhJ MGP_PWKPhJ_G0010326
pseudogene Chr11:56758474-56758938 (-)
SPRET/EiJ MGP_SPRETEiJ_G0010136
pseudogene Chr11:58208799-58209263 (-)
WSB/EiJ MGP_WSBEiJ_G0010489
pseudogene Chr11:58086071-58086535 (-)



Homology
more
  • Human Ortholog
    H2BU1, H2B.U histone 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    H2BU1, H2B.U histone 1
    Orthology source: HomoloGene
  • Synonyms
    H2Bb, HIST3H2BB
  • Links
    NCBI Gene ID: 128312
    neXtProt AC: NX_Q8N257
    UniProt: Q8N257

  • Chr Location
    1q42.13; chr1:228458107-228458558 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 382522 NCBI Gene Model | MGI Sequence Detail 465 C57BL/6J ±  kb
transcript NR_134309 RefSeq | MGI Sequence Detail 465 C57BL/6  
polypeptide Q8CGP0 UniProt | EBI | MGI Sequence Detail 126 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    Genomic 1
    cDNA 3

    Microarray probesets 1
Other
Accession IDs
less
MGI:2144712
References
more
  • Summaries
    All 20
    Phenotypes 3
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:131436 Golas A, et al., Gene mapping of sperm quality parameters in recombinant inbred strains of mice. Int J Dev Biol. 2008;52(2-3):287-93

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/13/2020
MGI 6.16
The Jackson Laboratory