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Pdzd2 Gene Detail
Summary
  • Symbol
    Pdzd2
  • Name
    PDZ domain containing 2
  • Synonyms
    4930537L06Rik, A930022H17Rik, Gm21706, LOC223364, mKIAA0300, Pdzk3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922394
    NCBI Gene: 68070
  • Gene Overview
    MyGene.info: PDZD2
  • Alliance
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:12359711-12739924 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 5.90 cM, cytoband A2
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3322 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922394
protein coding gene Chr15:12357054-12739969 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021738
protein coding gene Chr15:9597834-9843652 (-)
A/J MGP_AJ_G0021698
protein coding gene Chr15:9291638-9671982 (-)
AKR/J MGP_AKRJ_G0021676
protein coding gene Chr15:9546562-9950484 (-)
BALB/cJ MGP_BALBcJ_G0021705
protein coding gene Chr15:9198802-9582092 (-)
C3H/HeJ MGP_C3HHeJ_G0021481
protein coding gene Chr15:9500979-9889666 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022144
protein coding gene Chr15:9943617-10343915 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019685
protein coding gene Chr15:8821081-9052894 (-)
CAST/EiJ MGP_CASTEiJ_G0020997
protein coding gene Chr15:9594464-9859983 (-)
CBA/J MGP_CBAJ_G0021450
protein coding gene Chr15:10231297-10663387 (-)
DBA/2J MGP_DBA2J_G0021574
protein coding gene Chr15:9149055-9528857 (-)
FVB/NJ MGP_FVBNJ_G0021552
protein coding gene Chr15:8998086-9382664 (-)
LP/J MGP_LPJ_G0021642
protein coding gene Chr15:9518600-9768647 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021577
protein coding gene Chr15:10468202-10718016 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022167
protein coding gene Chr15:9553968-9799230 (-)
PWK/PhJ MGP_PWKPhJ_G0020740
protein coding gene Chr15:9326050-9568858 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020578
protein coding gene Chr15:9477092-9723488 (-)
WSB/EiJ MGP_WSBEiJ_G0021053
protein coding gene Chr15:9535245-9782057 (-)



Homology
more
  • Human Ortholog
    PDZD2, PDZ domain containing 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PDZD2, PDZ domain containing 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    AIPC, PAPIN, PDZK3, PIN1
  • Links
    NCBI Gene ID: 23037
    neXtProt AC: NX_O15018
    UniProt: O15018

  • Chr Location
    5p13.3; chr5:31639388-32110932 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 23393
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PDZD2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    4 phenotype references
Mice homozygous for a gene trapped allele exhibit normal response to acute and chronic pain.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022197 Ensembl Gene Model | MGI Sequence Detail 380214 C57BL/6J ±  kb
transcript ENSMUST00000075317 Ensembl | MGI Sequence Detail 10756 Not Applicable  
polypeptide ENSMUSP00000074788 Ensembl | MGI Sequence Detail 2796 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 45
    cDNA 45

    Microarray probesets 2
Other
Accession IDs
less
MGI:1915320, MGI:2684928, MGI:5435061
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory