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Lysmd4 Gene Detail
Summary
  • Symbol
    Lysmd4
  • Name
    LysM, putative peptidoglycan-binding, domain containing 4
  • Synonyms
    4930506D23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922349
    NCBI Gene: 75099
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:66872292-66878216 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 36.71 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    55 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922349
 protein coding gene Chr7:66872292-66957078 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032357
 protein coding gene Chr7:68471456-68477385 (+)
A/J MGP_AJ_G0032336
 protein coding gene Chr7:67065576-67071499 (+)
AKR/J MGP_AKRJ_G0032272
 protein coding gene Chr7:68484966-68490890 (+)
BALB/cJ MGP_BALBcJ_G0032348
 protein coding gene Chr7:66800314-66806237 (+)
C3H/HeJ MGP_C3HHeJ_G0032061
 protein coding gene Chr7:69174503-69180426 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032840
 protein coding gene Chr7:71409525-71415448 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029847
 protein coding gene Chr7:69942961-69948890 (+)
CAST/EiJ MGP_CASTEiJ_G0031389
 protein coding gene Chr7:59861743-59867658 (+)
CBA/J MGP_CBAJ_G0032027
 protein coding gene Chr7:73650919-73656939 (+)
DBA/2J MGP_DBA2J_G0032182
 protein coding gene Chr7:65784620-65790546 (+)
FVB/NJ MGP_FVBNJ_G0032137
 protein coding gene Chr7:65903113-65909127 (+)
LP/J MGP_LPJ_G0032263
 protein coding gene Chr7:69698645-69704577 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032174
 protein coding gene Chr7:73851636-73857571 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032858
 protein coding gene Chr7:67843604-67849527 (+)
PWK/PhJ MGP_PWKPhJ_G0031109
 protein coding gene Chr7:58833666-58839604 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030950
 protein coding gene Chr7:54894804-54900672 (+)
WSB/EiJ MGP_WSBEiJ_G0031507
 protein coding gene Chr7:68189686-68195653 (+)



Homology
more
  • Human Ortholog
    LYSMD4, LysM domain containing 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LYSMD4, LysM domain containing 4
  • Links
    NCBI Gene ID: 145748
    neXtProt AC: NX_Q5XG99
    UniProt: Q5XG99

  • Chr Location
    15q26.3; chr15:99715697-99733561 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    770
  • Tissues
    6
  • cDNA Data
    40
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 75099 NCBI Gene Model | MGI Sequence Detail 5925 C57BL/6J ±  kb
transcript NM_001357964 RefSeq | MGI Sequence Detail 3409 C57BL/6  
polypeptide Q8CC84 UniProt | EBI | MGI Sequence Detail 293 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000030809 LysM and putative peptidoglycan-binding domain-containing protein 4
    (term hierarchy)
  • InterPro Domains
    IPR045030 LysM and putative peptidoglycan-binding domain-containing protein 1-4
    IPR018392 LysM domain
    IPR036779 LysM domain superfamily
Molecular
Reagents
less
  • All nucleic 40
    cDNA 40

    Microarray probesets 5
References
more
  • Summaries
    All 35
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 13
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory