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Lysmd4 Gene Detail
Summary
  • Symbol
    Lysmd4
  • Name
    LysM, putative peptidoglycan-binding, domain containing 4
  • Synonyms
    4930506D23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922349
    NCBI Gene: 75099
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:67222544-67228468 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 36.71 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    55 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922349
protein coding gene Chr7:67222544-67307330 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032357
protein coding gene Chr7:68471456-68477385 (+)
A/J MGP_AJ_G0032336
protein coding gene Chr7:67065576-67071499 (+)
AKR/J MGP_AKRJ_G0032272
protein coding gene Chr7:68484966-68490890 (+)
BALB/cJ MGP_BALBcJ_G0032348
protein coding gene Chr7:66800314-66806237 (+)
C3H/HeJ MGP_C3HHeJ_G0032061
protein coding gene Chr7:69174503-69180426 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032840
protein coding gene Chr7:71409525-71415448 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029847
protein coding gene Chr7:69942961-69948890 (+)
CAST/EiJ MGP_CASTEiJ_G0031389
protein coding gene Chr7:59861743-59867658 (+)
CBA/J MGP_CBAJ_G0032027
protein coding gene Chr7:73650919-73656939 (+)
DBA/2J MGP_DBA2J_G0032182
protein coding gene Chr7:65784620-65790546 (+)
FVB/NJ MGP_FVBNJ_G0032137
protein coding gene Chr7:65903113-65909127 (+)
LP/J MGP_LPJ_G0032263
protein coding gene Chr7:69698645-69704577 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032174
protein coding gene Chr7:73851636-73857571 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032858
protein coding gene Chr7:67843604-67849527 (+)
PWK/PhJ MGP_PWKPhJ_G0031109
protein coding gene Chr7:58833666-58839604 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030950
protein coding gene Chr7:54894804-54900672 (+)
WSB/EiJ MGP_WSBEiJ_G0031507
protein coding gene Chr7:68189686-68195653 (+)



Homology
more
  • Human Ortholog
    LYSMD4, LysM domain containing 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    LYSMD4, LysM domain containing 4
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 145748
    neXtProt AC: NX_Q5XG99
    UniProt: Q5XG99

  • Chr Location
    15q26.3; chr15:99715033-99733561 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 75099 NCBI Gene Model | MGI Sequence Detail 5925 C57BL/6J ±  kb
transcript NM_001357964 RefSeq | MGI Sequence Detail 3409 C57BL/6  
polypeptide Q8CC84 UniProt | EBI | MGI Sequence Detail 293 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 40
    cDNA 40

    Microarray probesets 5
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 12
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/14/2019
MGI 6.14
The Jackson Laboratory