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Zcchc13 Gene Detail
Summary
  • Symbol
    Zcchc13
  • Name
    zinc finger, CCHC domain containing 13
  • Synonyms
    4930513O09Rik, Cnbp2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922314
    NCBI Gene: 75064
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:102674192-102675276 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 46.26 cM, cytoband C3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    7 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922314
 protein coding gene ChrX:102674187-102675277 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035986
 protein coding gene ChrX:100302263-100303347 (+)
A/J MGP_AJ_G0035967
 protein coding gene ChrX:100219537-100220621 (+)
AKR/J MGP_AKRJ_G0035885
 protein coding gene ChrX:103247475-103248559 (+)
BALB/cJ MGP_BALBcJ_G0035957
 protein coding gene ChrX:99017640-99018724 (+)
C3H/HeJ MGP_C3HHeJ_G0035663
 protein coding gene ChrX:100753903-100754987 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036483
 protein coding gene ChrX:103258975-103260059 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033311
 protein coding gene ChrX:97849750-97850848 (+)
CAST/EiJ MGP_CASTEiJ_G0034949
 protein coding gene ChrX:85023780-85024860 (+)
CBA/J MGP_CBAJ_G0035638
 protein coding gene ChrX:106453931-106455015 (+)
DBA/2J MGP_DBA2J_G0035792
 protein coding gene ChrX:99459853-99460937 (+)
FVB/NJ MGP_FVBNJ_G0035733
 protein coding gene ChrX:98767519-98768603 (+)
LP/J MGP_LPJ_G0035885
 protein coding gene ChrX:101314803-101315887 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035765
 protein coding gene ChrX:111109842-111110926 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036509
 protein coding gene ChrX:99973379-99974463 (+)
PWK/PhJ MGP_PWKPhJ_G0034647
 protein coding gene ChrX:82601454-82602537 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034475
 protein coding gene ChrX:85736887-85737970 (+)
WSB/EiJ MGP_WSBEiJ_G0035089
 protein coding gene ChrX:98697812-98698896 (+)



Homology
more
  • Human Ortholog
    ZCCHC13, zinc finger CCHC-type containing 13
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZCCHC13, zinc finger CCHC-type containing 13
  • Synonyms
    CNBP2, ZNF9L
  • Links
    NCBI Gene ID: 389874
    neXtProt AC: NX_Q8WW36
    UniProt: Q8WW36

  • Chr Location
    Xq13.2; chrX:74304180-74305034 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    2 phenotype references
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    728
  • Tissues
    22
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031330 Ensembl Gene Model | MGI Sequence Detail 1085 C57BL/6J ±  kb
transcript ENSMUST00000033692 Ensembl | MGI Sequence Detail 1085 Not Applicable  
polypeptide ENSMUSP00000033692 Ensembl | MGI Sequence Detail 170 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR001878 Zinc finger, CCHC-type
    IPR036875 Zinc finger, CCHC-type superfamily
Molecular
Reagents
less
  • All nucleic 7
    cDNA 6
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:234235 Miyata H, et al., Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory