4930505N22Rik Gene Detail

Summary

• Symbol
  4930505N22Rik
• Name
  RIKEN cDNA 4930505N22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922306
  NCBI Gene: 100174921
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:45986576-46001825 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 38.75 cM, cytoband D1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  576 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922306	lncRNA gene	Chr19:45986569-46001834 (+)
129S1/SvImJ	ENSMUSG00200021616	lncRNA gene	Chr19:42685562-42700809 (+)
A/J	ENSMUSG00195017575	lncRNA gene	Chr19:42820151-42835459 (+)
AKR/J	ENSMUSG00220019550	lncRNA gene	Chr19:42622718-42638016 (+)
BALB/cJ	ENSMUSG00180022109	lncRNA gene	Chr19:43072452-43087764 (+)
C3H/HeJ	ENSMUSG00175006588	lncRNA gene	Chr19:42614576-42629821 (+)
C57BL/6NJ	ENSMUSG00215005072	lncRNA gene	Chr19:42683586-42698837 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017276	lncRNA gene	Chr19:42264657-42279934 (+)
CBA/J	ENSMUSG00210019284	lncRNA gene	Chr19:42694158-42709403 (+)
DBA/2J	ENSMUSG00185009293	lncRNA gene	Chr19:43195908-43211216 (+)
FVB/NJ	ENSMUSG00205038029	lncRNA gene	Chr19:42109248-42124496 (+)
JF1/MsJ	ENSUMUG00000047965	lncRNA gene	Chr19:43350641-43366074 (+)
LP/J	ENSMUSG00230025465	lncRNA gene	Chr19:43955231-43970479 (+)
NOD/ShiLtJ	ENSMUSG00190005593	lncRNA gene	Chr19:42560145-42575441 (+)
NZO/HlLtJ	ENSMUSG00225044368	lncRNA gene	Chr19:47551848-47567142 (+)
PWK/PhJ	ENSLUMG00010001280	lncRNA gene	Chr19:42509654-42525009 (+)
SPRET/EiJ	ENSMSPG00010008098	lncRNA gene	Chr19:42255916-42271252 (+)
WSB/EiJ	ENSIUOG00005006940	lncRNA gene	Chr19:42058007-42073495 (+)

Homology

• Gene Tree
  4930505N22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving 4930505N22Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000097690 (Evidence)
• NCBI Gene
  100174921

Representative Sequences			Length	Strain/Species
genomic	100174921	NCBI Gene Model | MGI Sequence Detail	15250	C57BL/6J
transcript	NR_152221	RefSeq | MGI Sequence Detail	945	ZRU/MplStud
polypeptide	Q9CUK5	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:196292 Marinic M, et al., An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape. Dev Cell. 2013 Mar 11;24(5):530-42

TSS for 4930505N22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156701	Chr19:45986570-45986581 (+)	0 bp
Tssr156702	Chr19:45986582-45986592 (+)	11 bp