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Ct55 Gene Detail
Summary
  • Symbol
    Ct55
  • Name
    cancer/testis antigen 55
  • Synonyms
    4930502E18Rik, Ct55
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922263
    NCBI Gene: 75013
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:53724826-53738441 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 29.99 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    54 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922263
protein coding gene ChrX:53724655-53738565 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035729
protein coding gene ChrX:48998057-49011665 (+)
A/J MGP_AJ_G0035711
protein coding gene ChrX:48891596-48907001 (+)
AKR/J MGP_AKRJ_G0035632
protein coding gene ChrX:50254179-50270125 (+)
BALB/cJ MGP_BALBcJ_G0035698
protein coding gene ChrX:48366419-48380276 (+)
C3H/HeJ MGP_C3HHeJ_G0035401
protein coding gene ChrX:49277768-49291414 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036227
protein coding gene ChrX:50179660-50193425 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033079
protein coding gene ChrX:46282164-46296128 (+)
CAST/EiJ MGP_CASTEiJ_G0034694
protein coding gene ChrX:36560461-36574802 (+)
CBA/J MGP_CBAJ_G0035375
protein coding gene ChrX:51572428-51587868 (+)
DBA/2J MGP_DBA2J_G0035530
protein coding gene ChrX:48622789-48636190 (+)
FVB/NJ MGP_FVBNJ_G0035479
protein coding gene ChrX:48244075-48257364 (+)
LP/J MGP_LPJ_G0035618
protein coding gene ChrX:49384372-49397770 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035518
protein coding gene ChrX:53111721-53125390 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036245
protein coding gene ChrX:48893149-48906749 (+)
PWK/PhJ MGP_PWKPhJ_G0034392
protein coding gene ChrX:36102159-36116191 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034235
protein coding gene ChrX:37380550-37394954 (+)
WSB/EiJ MGP_WSBEiJ_G0034837
protein coding gene ChrX:48458367-48472012 (+)



Homology
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Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit reduced susceptibility to weight loss, rectal prolapse and visible tumors in an AOM/DSS model of colitis and tumorogenesis.
Gene Ontology
(GO)
Classifications
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Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000055555 Ensembl Gene Model | MGI Sequence Detail 13616 C57BL/6J ±  kb
transcript ENSMUST00000069209 Ensembl | MGI Sequence Detail 1427 Not Applicable  
polypeptide ENSMUSP00000064619 Ensembl | MGI Sequence Detail 236 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 20
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:280149 Zhao H, et al., Cancer testis antigen 55 deficiency attenuates colitis-associated colorectal cancer by inhibiting NF-kappaB signaling. Cell Death Dis. 2019 Apr 3;10(4):304

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/03/2020
MGI 6.15
The Jackson Laboratory