Platr14 Gene Detail

Summary

• Symbol
  Platr14
• Name
  pluripotency associated transcript 14
• Synonyms
  4930500J02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1922209
  NCBI Gene: 74959
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:104389529-104401774 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 54.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  450 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922209	lncRNA gene	Chr2:104389483-104402779 (+)
129S1/SvImJ	ENSMUSG00200002482	lncRNA gene	Chr2:101218931-101231215 (+)
A/J	ENSMUSG00195031808	lncRNA gene	Chr2:101372104-101384341 (+)
AKR/J	ENSMUSG00220001634	lncRNA gene	Chr2:101123175-101135410 (+)
BALB/cJ	ENSMUSG00180033147	lncRNA gene	Chr2:101173161-101185397 (+)
C3H/HeJ	ENSMUSG00175010157	lncRNA gene	Chr2:101465891-101478171 (+)
C57BL/6NJ	ENSMUSG00215019556	lncRNA gene	Chr2:101274333-101286618 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013582	unclassified non-coding RNA gene	Chr2:98033310-98046058 (+)
CAST/EiJ	ENSTCUG00005001597	lncRNA gene	Chr2:100543718-100555821 (+)
CBA/J	ENSMUSG00210041307	lncRNA gene	Chr2:101450969-101463205 (+)
DBA/2J	ENSMUSG00185005648	lncRNA gene	Chr2:101169948-101182184 (+)
FVB/NJ	ENSMUSG00205011275	lncRNA gene	Chr2:100500744-100513040 (+)
JF1/MsJ	ENSUMUG00000028971	lncRNA gene	Chr2:100875136-100887418 (+)
LP/J	ENSMUSG00230006609	lncRNA gene	Chr2:102919228-102931460 (+)
NOD/ShiLtJ	ENSMUSG00190015656	lncRNA gene	Chr2:101300284-101312560 (+)
NZO/HlLtJ	ENSMUSG00225008839	lncRNA gene	Chr2:110822893-110835170 (+)
PWK/PhJ	ENSLUMG00010024545	lncRNA gene	Chr2:100878734-100891031 (+)
SPRET/EiJ	ENSMSPG00010039720	lncRNA gene	Chr2:102917333-102934628 (+)
WSB/EiJ	ENSIUOG00005001619	lncRNA gene	Chr2:100973718-100985980 (+)

Homology

• Gene Tree
  Platr14
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  7
• Radiation induced
  1
• Genomic Mutations
  2 involving Platr14
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  63
• RefSeq
  2

• Ensembl
  ENSMUSG00000086454 (Evidence)
• NCBI Gene
  74959

Representative Sequences			Length	Strain/Species
genomic	74959	NCBI Gene Model | MGI Sequence Detail	12246	C57BL/6J
transcript	NR_040323	RefSeq | MGI Sequence Detail	887	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 16

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46

TSS for Platr14:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19216	Chr2:104389523-104389533 (+)	-1 bp