4930481A15Rik Gene Detail

Summary

• Symbol
  4930481A15Rik
• Name
  RIKEN cDNA 4930481A15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922181
  NCBI Gene: 74931
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr19:5456843-5472875 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 4.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  444 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922181	lncRNA gene	Chr19:5456764-5472880 (+)
129S1/SvImJ	ENSMUSG00200052446	lncRNA gene	Chr19:2218683-2234790 (+)
A/J	ENSMUSG00195054065	lncRNA gene	Chr19:2614362-2630358 (+)
AKR/J	ENSMUSG00220050578	lncRNA gene	Chr19:2387482-2403478 (+)
BALB/cJ	ENSMUSG00180052499	lncRNA gene	Chr19:2989080-3005076 (+)
C3H/HeJ	ENSMUSG00175014776	lncRNA gene	Chr19:2239295-2255290 (+)
C57BL/6NJ	ENSMUSG00215047132	lncRNA gene	Chr19:2456883-2472991 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043358	lncRNA gene	Chr19:2379496-2395063 (+)
CBA/J	ENSMUSG00210050217	lncRNA gene	Chr19:2240257-2256376 (+)
DBA/2J	ENSMUSG00185052815	lncRNA gene	Chr19:2616718-2632838 (+)
FVB/NJ	ENSMUSG00205053313	lncRNA gene	Chr19:2624996-2641091 (+)
JF1/MsJ	ENSUMUG00000056370	lncRNA gene	Chr19:2595710-2611448 (+)
LP/J	ENSMUSG00230054305	lncRNA gene	Chr19:3525599-3541706 (+)
NOD/ShiLtJ	ENSMUSG00190053360	lncRNA gene	Chr19:2148882-2164878 (+)
NZO/HlLtJ	ENSMUSG00225026844	lncRNA gene	Chr19:7234374-7250481 (+)
PWK/PhJ	ENSLUMG00010008759	lncRNA gene	Chr19:2364594-2380118 (+)
SPRET/EiJ	ENSMSPG00010050820	lncRNA gene	Chr19:2352588-2370116 (+)
WSB/EiJ	ENSIUOG00005050772	lncRNA gene	Chr19:2256826-2272946 (+)

Homology

• Gene Tree
  4930481A15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  15
• Gene trapped
  15
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  606
• Tissues
  8
• cDNA Data
  4
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  66
• RefSeq
  2

• Ensembl
  ENSMUSG00000086938 (Evidence)
• NCBI Gene
  74931

Representative Sequences			Length	Strain/Species
genomic	74931	NCBI Gene Model | MGI Sequence Detail	16033	C57BL/6J
transcript	NR_015545	RefSeq | MGI Sequence Detail	2184	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 4

  Primer pair 1

References

• Summaries
  All 12

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398

TSS for 4930481A15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154412	Chr19:5456117-5456121 (+)	-724 bp
Tssr5410	Chr19:5456824-5456864 (+)	1 bp
Tssr154413	Chr19:5456892-5456908 (+)	57 bp
Tssr154414	Chr19:5464916-5464940 (+)	8,085 bp
Tssr154415	Chr19:5465002-5465006 (+)	8,161 bp