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Slc35f6 Gene Detail
Summary
  • Symbol
    Slc35f6
  • Name
    solute carrier family 35, member F6
  • Synonyms
    4930471M23Rik, 5730478O19Rik, p40, Tango9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922169
    NCBI Gene: 74919
  • Gene Overview
    MyGene.info: SLC35F6
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:30647939-30659729 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 16.74 cM, cytoband B1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    68 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922169
protein coding gene Chr5:30647933-30659729 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029393
protein coding gene Chr5:28604423-28614759 (+)
A/J MGP_AJ_G0029359
protein coding gene Chr5:27664833-27676672 (+)
AKR/J MGP_AKRJ_G0029310
protein coding gene Chr5:28816303-28826637 (+)
BALB/cJ MGP_BALBcJ_G0029370
protein coding gene Chr5:28191800-28203596 (+)
C3H/HeJ MGP_C3HHeJ_G0029091
protein coding gene Chr5:28810340-28822132 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029823
protein coding gene Chr5:30344749-30355052 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027061
protein coding gene Chr5:25154420-25166578 (+)
CAST/EiJ MGP_CASTEiJ_G0028502
protein coding gene Chr5:27908758-27920563 (+)
CBA/J MGP_CBAJ_G0029059
protein coding gene Chr5:30939135-30949438 (+)
DBA/2J MGP_DBA2J_G0029208
protein coding gene Chr5:27853977-27865778 (+)
FVB/NJ MGP_FVBNJ_G0029166
protein coding gene Chr5:27264704-27275007 (+)
LP/J MGP_LPJ_G0029293
protein coding gene Chr5:29058348-29068720 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029195
protein coding gene Chr5:31831030-31842832 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029857
protein coding gene Chr5:28315811-28327557 (+)
PWK/PhJ MGP_PWKPhJ_G0028226
protein coding gene Chr5:26967620-26979474 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028057
protein coding gene Chr5:27661153-27672997 (+)
WSB/EiJ MGP_WSBEiJ_G0028582
protein coding gene Chr5:28387784-28399622 (+)



Homology
more
  • Human Ortholog
    SLC35F6, solute carrier family 35 member F6
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SLC35F6, solute carrier family 35 member F6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ANT2BP, C2orf18, TANGO9
  • Links
    NCBI Gene ID: 54978
    neXtProt AC: NX_Q8N357
    UniProt: Q8N357

  • Chr Location
    2p23.3; chr2:26764274-26781231 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    29 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    10
  • Chemically induced (other)
    2
  • Gene trapped
    2
  • Radiation induced
    2
  • Spontaneous
    1
  • Targeted
    3
  • Genomic Mutations
    5 involving Slc35f6
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 74919 NCBI Gene Model | MGI Sequence Detail 11791 C57BL/6J ±  kb
transcript NM_175675 RefSeq | MGI Sequence Detail 3082 C57BL/6  
polypeptide Q8VE96 UniProt | EBI | MGI Sequence Detail 372 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    6 Sequences
  • InterPro Domains
    IPR012404 Nucleotide-sugar transporter-related
    IPR009262 Solute carrier family 35 member SLC35F1/F2/F6
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 6
Other
Accession IDs
less
MGI:2441700
References
more
  • Summaries
    All 51
    Diseases 1
    Gene Ontology 4
    Phenotypes 29
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory