4930449E01Rik Gene Detail

Summary

• Symbol
  4930449E01Rik
• Name
  RIKEN cDNA 4930449E01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922114
  NCBI Gene: 74864
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:105736222-105743063 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 56.07 cM, cytoband E2.3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922114	lncRNA gene	Chr14:105736222-105743063 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015281	unclassified non-coding RNA gene	Chr14:102082052-102088876 (+)
A/J	MGP_AJ_G0015255	unclassified non-coding RNA gene	Chr14:98709570-98716396 (+)
AKR/J	MGP_AKRJ_G0015218	unclassified non-coding RNA gene	Chr14:101668252-101675078 (+)
BALB/cJ	MGP_BALBcJ_G0015219	unclassified non-coding RNA gene	Chr14:99059948-99066774 (+)
C3H/HeJ	MGP_C3HHeJ_G0015043	unclassified non-coding RNA gene	Chr14:101589162-101595980 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015674	unclassified non-coding RNA gene	Chr14:106187958-106194787 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013415	unclassified non-coding RNA gene	Chr14:95462702-95469384 (+)
CAST/EiJ	MGP_CASTEiJ_G0014594	unclassified non-coding RNA gene	Chr14:98904334-98913004 (+)
CBA/J	MGP_CBAJ_G0015023	unclassified non-coding RNA gene	Chr14:109992961-109999787 (+)
DBA/2J	MGP_DBA2J_G0015117	unclassified non-coding RNA gene	Chr14:98216763-98223573 (+)
FVB/NJ	MGP_FVBNJ_G0015124	unclassified non-coding RNA gene	Chr14:97150249-97157083 (+)
LP/J	MGP_LPJ_G0015197	unclassified non-coding RNA gene	Chr14:102903687-102910744 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015150	unclassified non-coding RNA gene	Chr14:112853480-112860292 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015713	unclassified non-coding RNA gene	Chr14:101182124-101188953 (+)
PWK/PhJ	MGP_PWKPhJ_G0014386	unclassified non-coding RNA gene	Chr14:95163244-95170070 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014173	unclassified non-coding RNA gene	Chr14:97172927-97179764 (+)
WSB/EiJ	MGP_WSBEiJ_G0014701	unclassified non-coding RNA gene	Chr14:101809437-101816246 (+)

Homology

• Gene Tree
  4930449E01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  2 involving 4930449E01Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000022116 (Evidence)
• NCBI Gene
  74864

Representative Sequences			Length	Strain/Species
genomic	74864	NCBI Gene Model | MGI Sequence Detail	6842	C57BL/6J
transcript	NR_045921	RefSeq | MGI Sequence Detail	602	C57BL/6
polypeptide	Q9D5E5	UniProt | EBI | MGI Sequence Detail	108	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 21

  Phenotypes 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:274872 Ingham NJ, et al., Mouse screen reveals multiple new genes underlying mouse and human hearing loss. PLoS Biol. 2019 Apr;17(4):e3000194

TSS for 4930449E01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127089	Chr14:105737252-105737287 (+)	1,048 bp
Tssr127090	Chr14:105737433-105737480 (+)	1,235 bp