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Usp38 Gene Detail
Summary
  • Symbol
    Usp38
  • Name
    ubiquitin specific peptidase 38
  • Synonyms
    4631402N15Rik, 4833420O05Rik, mKIAA1891
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922091
    NCBI Gene: 74841
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:80980733-81014928 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 38.68 cM, cytoband C3
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    269 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922091
protein coding gene Chr8:80980724-81015031 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033821
protein coding gene Chr8:81722977-81759084 (-)
A/J MGP_AJ_G0033804
protein coding gene Chr8:78482159-78515473 (-)
AKR/J MGP_AKRJ_G0033730
protein coding gene Chr8:80832346-80867181 (-)
BALB/cJ MGP_BALBcJ_G0033797
protein coding gene Chr8:78585965-78619846 (-)
C3H/HeJ MGP_C3HHeJ_G0033506
protein coding gene Chr8:81460828-81494115 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034317
protein coding gene Chr8:84875202-84911034 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031258
protein coding gene Chr8:72471671-72503966 (-)
CAST/EiJ MGP_CASTEiJ_G0032837
protein coding gene Chr8:80798112-80833981 (-)
CBA/J MGP_CBAJ_G0033485
protein coding gene Chr8:87874209-87912023 (-)
DBA/2J MGP_DBA2J_G0033638
protein coding gene Chr8:78157362-78190494 (-)
FVB/NJ MGP_FVBNJ_G0033583
protein coding gene Chr8:77105576-77138592 (-)
LP/J MGP_LPJ_G0033728
protein coding gene Chr8:81808902-81842290 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033626
protein coding gene Chr8:90353403-90389086 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034334
protein coding gene Chr8:80830370-80866880 (-)
PWK/PhJ MGP_PWKPhJ_G0032540
protein coding gene Chr8:77417467-77451495 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032378
protein coding gene Chr8:79645806-79678226 (-)
WSB/EiJ MGP_WSBEiJ_G0032950
protein coding gene Chr8:81181535-81216175 (-)



Homology
more
  • Human Ortholog
    USP38, ubiquitin specific peptidase 38
  • Vertebrate Orthologs
    10
  • Human Ortholog
    USP38, ubiquitin specific peptidase 38
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HP43.8KD
  • Links
    NCBI Gene ID: 84640
    neXtProt AC: NX_Q8NB14
    UniProt: Q8NB14

  • Chr Location
    4q31.21; chr4:143184917-143223874 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 12367
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: USP38
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    36 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000038250 Ensembl Gene Model | MGI Sequence Detail 34196 C57BL/6J ±  kb
    transcript ENSMUST00000042724 Ensembl | MGI Sequence Detail 4707 Not Applicable  
    polypeptide ENSMUSP00000039943 Ensembl | MGI Sequence Detail 1042 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 112
      cDNA 112

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1918043, MGI:2142429, MGI:2142721, MGI:2142798
    References
    more
    • Summaries
      All 69
      Developmental Gene Expression 1
      Gene Ontology 6
      Phenotypes 36
    • Earliest
      J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54:113-145
    • Latest
      J:266142 Grosjean F, et al., Pharmacologic control of oxidative stress and inflammation determines whether diabetic glomerulosclerosis progresses or decreases: A pilot study in sclerosis-prone mice. PLoS One. 2018;13(9):e0204366

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory