About   Help   FAQ
Rrp7a
Gene Detail
Symbol

Name
ID
Rrp7a
ribosomal RNA processing 7 homolog A (S. cerevisiae)
MGI:1922028
Synonyms
1110014J01Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 15
39.40 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:83113433-83122801 bp, - strand
From VEGA annotation of GRCm38

  9369 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41060  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: RRP7A
Gene Tree: Rrp7a

Human
homologs
RRP7A, ribosomal RNA processing 7 homolog A (S. cerevisiae)
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 27341
neXtProt AC: NX_Q9Y3A4

Human Synonyms: BK126B4.3, CGI-96

Human Chr (Location): 22q13.2; chr22:42508335-42519823 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Radiation induced(1) Targeted(2)
Genomic Mutations involving Rrp7a (1)
Incidental mutations (data from APF )
Phenotype Images(2)
Interactions
Rrp7a interacts with 244 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process blastocyst formation, ribosomal small subunit assembly, ...
Component CURI complex, cytoplasm, ...
Function nucleotide binding, poly(A) RNA binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (7)    Tissues (7)    Tissue x Stage Matrix (view)
Assay TypeResults
RT-PCR 7
cDNA source data(13)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase rrp7a ; ZFIN rrp7a    NEW 
Molecular
reagents
All nucleic(14) cDNA(13) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000035729 (Evidence)
Ensembl Gene Model ENSMUSG00000018040 (Evidence)
Entrez Gene 74778 (Evidence)
Consensus CDS Project CCDS27696.1
International Mouse Phenotyping Consortium Status Rrp7a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035729 VEGA Gene Model | MGI Sequence Detail 9369 C57BL/6J ±  kb
transcript OTTMUST00000091348 VEGA | MGI Sequence Detail 4363 Not Applicable 
polypeptide OTTMUSP00000050312 VEGA | MGI Sequence Detail 280 Not Applicable 

For the selected sequences
All sequences(60) RefSeq(3) UniProt(6)
Polymorphisms
SNPs within 2kb(42 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR024326 Ribosomal RNA-processing protein 7
Protein Ontology PR:000014313 ribosomal RNA-processing protein 7 homolog A
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:215371 Maserati M, et al., Identification of four genes required for mammalian blastocyst formation. Zygote. 2014 Aug;22(3):331-9
All references(28)
Other
accession IDs
MGI:2142919

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
05/20/2015
MGI 5.22
The Jackson Laboratory