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Rrp7a Gene Detail
Summary
  • Symbol
    Rrp7a
  • Name
    ribosomal RNA processing 7 homolog A (S. cerevisiae)
  • Synonyms
    1110014J01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922028
    NCBI Gene: 74778
  • Gene Overview
    MyGene.info: RRP7A
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:83115846-83122831 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 39.40 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    37 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922028
protein coding gene Chr15:83113433-83122831 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022158
protein coding gene Chr15:83777035-83786383 (-)
A/J MGP_AJ_G0022117
protein coding gene Chr15:80721060-80727087 (-)
AKR/J MGP_AKRJ_G0022092
protein coding gene Chr15:83038478-83049557 (-)
BALB/cJ MGP_BALBcJ_G0022123
protein coding gene Chr15:80861466-80867806 (-)
C3H/HeJ MGP_C3HHeJ_G0021893
protein coding gene Chr15:83035383-83046305 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022568
protein coding gene Chr15:87009687-87022352 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020092
protein coding gene Chr15:77113169-77122844 (-)
CAST/EiJ MGP_CASTEiJ_G0021415
protein coding gene Chr15:83779048-83788342 (-)
CBA/J MGP_CBAJ_G0021860
protein coding gene Chr15:89755084-89766343 (-)
DBA/2J MGP_DBA2J_G0021987
protein coding gene Chr15:80219824-80229682 (-)
FVB/NJ MGP_FVBNJ_G0021966
protein coding gene Chr15:79253253-79265144 (-)
LP/J MGP_LPJ_G0022058
protein coding gene Chr15:83952049-83961282 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021986
protein coding gene Chr15:94687520-94699745 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022583
protein coding gene Chr15:83068203-83088221 (-)
PWK/PhJ MGP_PWKPhJ_G0021156
protein coding gene Chr15:80192256-80202765 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020990
protein coding gene Chr15:82798262-82807536 (-)
WSB/EiJ MGP_WSBEiJ_G0021464
protein coding gene Chr15:83576240-83582490 (-)



Homology
more
  • Human Ortholog
    RRP7A, ribosomal RNA processing 7 homolog A
  • Vertebrate Orthologs
    8
  • Human Ortholog
    RRP7A, ribosomal RNA processing 7 homolog A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BK126B4.3, CGI-96, Rrp7
  • Links
    NCBI Gene ID: 27341
    neXtProt AC: NX_Q9Y3A4
    UniProt: Q9Y3A4

  • Chr Location
    22q13.2; chr22:42508335-42519823 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Radiation induced
    2
  • Targeted
    2
  • Genomic Mutations
    3 involving Rrp7a
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 74778 NCBI Gene Model | MGI Sequence Detail 6986 C57BL/6J ±  kb
transcript NM_029101 RefSeq | MGI Sequence Detail 1965 C57BL/6  
polypeptide Q9D1C9 UniProt | EBI | MGI Sequence Detail 280 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    6 Sequences
  • Protein Ontology
    PR:000014313 ribosomal RNA-processing protein 7 homolog A
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR024326 Ribosomal RNA-processing protein 7, C-terminal domain
    IPR035979 RNA-binding domain superfamily
    IPR034890 Rrp7A, RNA recognition motif
Molecular
Reagents
less
  • All nucleic 15
    cDNA 14
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:2142919
References
more
  • Summaries
    All 48
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 6
    Phenotypes 21
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:244597 Cui W, et al., Towards Functional Annotation of the Preimplantation Transcriptome: An RNAi Screen in Mammalian Embryos. Sci Rep. 2016 Nov 21;6:37396

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory