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Rrp7a
Gene Detail
 Symbol
Name
ID
Rrp7a
ribosomal RNA processing 7 homolog A (S. cerevisiae)
MGI:1922028
Synonyms 1110014J01Rik
Feature Type protein coding gene
Genetic Map
Chromosome 15
39.40 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:83113433-83122801 bp, - strand
From VEGA annotation of GRCm38

  9369 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41060  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Rrp7a

Human
homologs
Human Homolog RRP7A, ribosomal RNA processing 7 homolog A (S. cerevisiae)
NCBI Gene ID 27341
neXtProt AC  NX_Q9Y3A4
Human Synonyms  BK126B4.3, CGI-96
Human Chr (Location)  22q13.2; chr22:42508335-42519823 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Radiation induced(1) Targeted(2)
Genomic Mutations involving Rrp7a (1)
Incidental mutations (data from APF )
Interactions
Rrp7a interacts with 245 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process biological_process
Component cellular_component
Function nucleotide binding, poly(A) RNA binding, ...
External Resources: FuncBase
Expression
cDNA source data(13)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(13)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000035729 (Evidence)
Ensembl Gene ModelENSMUSG00000018040 (Evidence)
Entrez Gene74778 (Evidence)
Consensus CDS ProjectCCDS27696.1
International Mouse Knockout Project StatusRrp7a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035729 VEGA Gene Model | MGI Sequence Detail 9369 C57BL/6J ±  kb
transcript OTTMUST00000091348 VEGA | MGI Sequence Detail 4363 Not Applicable 
polypeptide OTTMUSP00000050312 VEGA | MGI Sequence Detail 280 Not Applicable 

For the selected sequences
All sequences(56) RefSeq(3) UniProt(6)
Polymorphisms SNPs within 2kb(42 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR024326 Ribosomal RNA-processing protein 7
Protein Ontology PR:000014313 ribosomal RNA-processing protein 7 homolog A
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)
Other
accession IDs
MGI:2142919

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory