Mirt1 Gene Detail

Summary

• Symbol
  Mirt1
• Name
  myocardial infarction associated transcript 1
• Synonyms
  5430437C04Rik, 5830416P10Rik, Gm10758

• Feature Type
  lncRNA gene
• IDs
  MGI:1922001
  NCBI Gene: 381232
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:53431398-53453533 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 47.80 cM, cytoband D2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  822 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922001	lncRNA gene	Chr19:53429643-53453533 (-)
129S1/SvImJ	ENSMUSG00200020578	protein coding gene	Chr19:50117322-50122719 (-)
129S1/SvImJ	ENSMUSG00200021901	lncRNA gene	Chr19:50116641-50138254 (-)
A/J	ENSMUSG00195018847	lncRNA gene	Chr19:50291423-50313047 (-)
A/J	ENSMUSG00195016895	protein coding gene	Chr19:50292104-50297501 (-)
AKR/J	ENSMUSG00220019233	protein coding gene	Chr19:50061908-50067305 (-)
AKR/J	ENSMUSG00220019609	lncRNA gene	Chr19:50061227-50082846 (-)
BALB/cJ	ENSMUSG00180020217	lncRNA gene	Chr19:50531093-50552724 (-)
BALB/cJ	ENSMUSG00180016583	protein coding gene	Chr19:50531774-50537171 (-)
C3H/HeJ	ENSMUSG00175006442	lncRNA gene	Chr19:50066686-50088296 (-)
C3H/HeJ	ENSMUSG00175006004	protein coding gene	Chr19:50067367-50072768 (-)
C57BL/6NJ	ENSMUSG00215004978	lncRNA gene	Chr19:50158854-50180429 (-)
C57BL/6NJ	ENSMUSG00215004367	protein coding gene	Chr19:50159536-50164925 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005313	lincRNA gene	Chr19:49939548-49964193 (-)
CAST/EiJ	ENSTCUG00005017103	lncRNA gene	Chr19:49717685-49738964 (-)
CBA/J	ENSMUSG00210018652	protein coding gene	Chr19:50146877-50152274 (-)
CBA/J	ENSMUSG00210019392	lncRNA gene	Chr19:50146196-50167817 (-)
DBA/2J	ENSMUSG00185028229	lncRNA gene	Chr19:50644675-50666282 (-)
DBA/2J	ENSMUSG00185027288	protein coding gene	Chr19:50645356-50650753 (-)
FVB/NJ	ENSMUSG00205035222	lncRNA gene	Chr19:49529504-49551116 (-)
FVB/NJ	ENSMUSG00205024913	protein coding gene	Chr19:49530185-49535580 (-)
JF1/MsJ	ENSUMUG00000038365	lncRNA gene	Chr19:50839690-50861031 (-)
LP/J	ENSMUSG00230024514	protein coding gene	Chr19:51399018-51404415 (-)
LP/J	ENSMUSG00230028412	lncRNA gene	Chr19:51398337-51419943 (-)
NOD/ShiLtJ	ENSMUSG00190005625	lncRNA gene	Chr19:50014569-50036171 (-)
NZO/HlLtJ	ENSMUSG00225025654	lncRNA gene	Chr19:55000644-55022262 (-)
NZO/HlLtJ	ENSMUSG00225024876	protein coding gene	Chr19:55001325-55006724 (-)
PWK/PhJ	ENSLUMG00010001240	lncRNA gene	Chr19:49892366-49913885 (-)
SPRET/EiJ	ENSMSPG00010008418	lncRNA gene	Chr19:49739653-49761980 (-)
WSB/EiJ	ENSIUOG00005006990	lncRNA gene	Chr19:49505892-49534615 (-)

Homology

• Gene Tree
  Mirt1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  9
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  167
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000097636 (Evidence)
• NCBI Gene
  381232

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097636	Ensembl Gene Model | MGI Sequence Detail	22136	C57BL/6J
transcript	ENSMUST00000180489	Ensembl | MGI Sequence Detail	3601	Not Applicable
polypeptide	Q3UKC4	UniProt | EBI | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:1925346, MGI:3642467

References

• Summaries
  All 19

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460

TSS for Mirt1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159827	Chr19:53453152-53453264 (-)	325 bp
Tssr159826	Chr19:53448679-53448693 (-)	4,847 bp
Tssr159825	Chr19:53439949-53439965 (-)	13,576 bp