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C2cd5 Gene Detail
Summary
  • Symbol
    C2cd5
  • Name
    C2 calcium-dependent domain containing 5
  • Synonyms
    5730419I09Rik, C030008B15Rik, CDP138
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921991
    NCBI Gene: 74741
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:143010920-143100141 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 75.13 cM, cytoband G2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    685 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921991
protein coding gene Chr6:143010920-143100152 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031472
protein coding gene Chr6:147840084-147933971 (-)
A/J MGP_AJ_G0031447
protein coding gene Chr6:142032967-142121714 (-)
AKR/J MGP_AKRJ_G0031375
protein coding gene Chr6:146246198-146337486 (-)
BALB/cJ MGP_BALBcJ_G0031454
protein coding gene Chr6:141797484-141887255 (-)
C3H/HeJ MGP_C3HHeJ_G0031176
protein coding gene Chr6:146281716-146373201 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031916
protein coding gene Chr6:151883813-151977202 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029040
protein coding gene Chr6:140845185-140935227 (-)
CAST/EiJ MGP_CASTEiJ_G0030544
protein coding gene Chr6:145876069-145971986 (-)
CBA/J MGP_CBAJ_G0031136
protein coding gene Chr6:157659802-157756823 (-)
DBA/2J MGP_DBA2J_G0031293
protein coding gene Chr6:140856495-140945420 (-)
FVB/NJ MGP_FVBNJ_G0031244
protein coding gene Chr6:139590856-139681597 (-)
LP/J MGP_LPJ_G0031377
protein coding gene Chr6:147982738-148075944 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031284
protein coding gene Chr6:161537400-161637187 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031948
protein coding gene Chr6:146089449-146184285 (-)
PWK/PhJ MGP_PWKPhJ_G0030271
protein coding gene Chr6:139335190-139430203 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030095
protein coding gene Chr6:144271338-144365851 (-)
WSB/EiJ MGP_WSBEiJ_G0030637
protein coding gene Chr6:146690519-146782325 (-)



Homology
more
  • Human Ortholog
    C2CD5, C2 calcium dependent domain containing 5
  • Vertebrate Orthologs
    10
  • Human Ortholog
    C2CD5, C2 calcium dependent domain containing 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDP138, KIAA0528
  • Links
    NCBI Gene ID: 9847
    neXtProt AC: NX_Q86YS7
    UniProt: Q86YS7

  • Chr Location
    12p12.1; chr12:22448546-22544546 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 8873
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: C2CD5
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030279 Ensembl Gene Model | MGI Sequence Detail 89222 C57BL/6J ±  kb
transcript ENSMUST00000203673 Ensembl | MGI Sequence Detail 3332 Not Applicable  
polypeptide ENSMUSP00000145425 Ensembl | MGI Sequence Detail 1052 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 139
    cDNA 139

    Microarray probesets 4
Other
Accession IDs
less
MGI:1924564
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:176654 McCormick JA, et al., A SPAK Isoform Switch Modulates Renal Salt Transport and Blood Pressure. Cell Metab. 2011 Sep 7;14(3):352-64

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory