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Setmar
Gene Detail
Symbol

Name
ID
Setmar
SET domain without mariner transposase fusion
MGI:1921979
Synonyms
5830404F24Rik, Etet2
Feature Type
protein coding gene
Genetic Map
Chromosome 6
49.71 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:108065045-108077122 bp, + strand
From VEGA annotation of GRCm38

  12078 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:68519  Vertebrate Homology Class
1 mouse; 1 rat; 1 cattle; 1 dog; 1 zebrafish

Gene Tree: Setmar

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Spontaneous(1) Targeted(1)
Genomic Mutations involving Setmar (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Setmar interacts with 115 markers (Mir15b, Mir16-1, Mir16-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (12 annotations)
Process chromatin modification, histone lysine methylation, ...
Component chromosome, nucleus
Function histone-lysine N-methyltransferase activity, metal ion binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)    Images (12)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 94
cDNA source data(6)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase setmar ; ZFIN setmar    NEW 
Molecular
reagents
All nucleic(6) cDNA(6)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000017300 (Evidence)
Ensembl Gene Model ENSMUSG00000034639 (Evidence)
Entrez Gene 74729 (Evidence)
UniGene 56539
DFCI TC1586729
DoTS DT.40145967
NIA Mouse Gene Index U007245
EC 2.1.1.43
Consensus CDS Project CCDS51867.1
International Mouse Phenotyping Consortium Status Setmar
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017300 VEGA Gene Model | MGI Sequence Detail 12078 C57BL/6J ±  kb
transcript OTTMUST00000041969 VEGA | MGI Sequence Detail 1612 Not Applicable 
polypeptide OTTMUSP00000018872 VEGA | MGI Sequence Detail 309 Not Applicable 

For the selected sequences
All sequences(21) RefSeq(4) UniProt(1)
Polymorphisms
SNPs within 2kb(178 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003616 Post-SET domain
InterPro IPR007728 Pre-SET domain
InterPro IPR001214 SET domain
Protein Ontology PR:000014726 histone-lysine N-methyltransferase SETMAR
References
(Earliest) J:35000 Siddiqui J, et al., Identification and partial characterization of novel genes by differential display of mRNAs in squamous papillomas induced in skin of SENCAR mice. Int J Oncol. 1996 AUG;9(2):211-216
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(27)
Other
accession IDs
MGI:892975

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory