4930453H23Rik Gene Detail

Summary

• Symbol
  4930453H23Rik
• Name
  RIKEN cDNA 4930453H23 gene

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1921933
  NCBI Gene: 100503481
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:21072819-21087904 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 16.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921933	lncRNA gene	ChrX:21072819-21087904 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005743	lincRNA gene	Chr17:55418390-55433487 (+)
A/J	MGP_AJ_G0007526	lincRNA gene	ChrX:16214496-16231486 (-)
AKR/J	MGP_AKRJ_G0007498	lincRNA gene	ChrX:16798118-16815361 (-)
BALB/cJ	MGP_BALBcJ_G0007503	lincRNA gene	ChrX:15962325-15981182 (-)
C3H/HeJ	MGP_C3HHeJ_G0007448	lincRNA gene	ChrX:16331266-16349212 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005457	lincRNA gene	Chr12:637776-638033 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0007352	lincRNA gene	ChrX:15634300-15649805 (-)
CBA/J	MGP_CBAJ_G0007429	lincRNA gene	ChrX:17293788-17313365 (-)
DBA/2J	MGP_DBA2J_G0007455	lincRNA gene	ChrX:15981321-15997355 (-)
FVB/NJ	MGP_FVBNJ_G0007471	lincRNA gene	ChrX:15905195-15920324 (-)
LP/J	MGP_LPJ_G0007536	lincRNA gene	ChrX:16381486-16396665 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007452	lincRNA gene	ChrX:17569572-17584831 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0007292	lincRNA gene	ChrX:15210954-15226925 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007197	lincRNA gene	ChrX:16046038-16062425 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  4930453H23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  672
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• 4930453H23Rik interacts with 6 markers (Mir133b, Mir494, Mir697, ...) View All

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  8

• Ensembl
  ENSMUSG00000087358 (Evidence)
• NCBI Gene
  100503481

Representative Sequences			Length	Strain/Species
genomic	100503481	NCBI Gene Model | MGI Sequence Detail	15086	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90

TSS for 4930453H23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163112	ChrX:21087892-21087905 (-)	5 bp